We use Brownian dynamics (BD) simulations and single molecule experiments to investigate the influence of topological constraints and hydrodynamic interactions on the dynamics and rheology of solutions of ring-linear polymer blends at the overlap concentration. We find agreement between simulation and experiment in which rings in solution blends exhibit large conformational fluctuations. A subpopulation of rings shows extension overshoots in the startup of the flow, and other populations display tumbling and tank-treading at the steady state. Ring polymer fluctuations increase with the blend fraction of linear polymers and are peaked at a ring Weissenberg number . On the contrary, linear and ring polymers in pure solutions show a peak in fluctuations at the critical coil-stretch Weissenberg number . BD simulations show that extension overshoots on the startup of the flow are due to flow-induced intermolecular ring-linear polymer hooks, whereas fluctuations at the steady state are dominated by intermolecular hydrodynamic interactions (HIs). This is supported by simulations of bidisperse linear polymer solution blends, which show similar trends in conformational dynamics between rings and linear polymers with a matched contour length. Compared to BD simulations, single molecule experiments show quantitatively larger fluctuations, which could arise because experiments are performed on higher molecular weight polymers with stronger topological constraints. To this end, we have advanced the understanding of the effects of topological interactions and intermolecular HIs on the dynamics of semidilute ring-linear polymer blend solutions.
I. INTRODUCTION
The dynamics of ring polymers are of broad interest in fundamental polymer physics [1,2], technological applications [3,4], and biological systems [5]. In the context of polymer physics, ring polymers are a model for understanding the effect of the chain architecture. The dynamics and rheology of linear polymer solutions at varying concentration have been widely studied [6,7]. In the dilute limit, dynamics are governed by intramolecular excluded volume (EV) and hydrodynamic interactions (HIs). Polymer solutions enter the semidilute regime above the overlap concentration , where is the polymer molecular weight, is Avogadro’s number, and is the dilute polymer radius of gyration. In semidilute solutions, polymer dynamics are determined by both intramolecular and intermolecular EV and HI. Moreover, in melts, EV and HI are fully screened, and polymer dynamics are well described by either the Rouse model for unentangled polymers or the tube-reptation model for entangled polymers. The introduction of an end-free constraint in ring polymers changes the conformational dynamics and rheology of polymers in all three concentration regimes qualitatively and quantitatively.
In melts, polymer rheology can largely be understood on the basis of topological constraints. Linear polymer melts relax stress by the reptation of free ends along the polymer backbone, leading to a rubbery plateau modulus [6,7]. However, in ring polymer melts, the end-free constraint significantly suppresses entanglements and drives rings toward globular conformations, resulting in a significantly lower zero-shear viscosity as compared to linear polymer melts and the absence of a rubbery plateau modulus [8–10]. These results are only valid for pure ring melts, which remain challenging to synthesize [11,12]. The introduction of even trace linear contaminants results in significantly higher zero-shear viscosity and the return of a rubbery plateau modulus [8,9]. These rheological features are intrinsically connected to the polymer dynamics. Molecular dynamic (MD) simulations show long-lived relaxation modes in ring-linear polymer melt blends associated with the threading of linear polymers through rings [13]. MD simulations also show a maximum in zero-shear viscosity as a function of the blend ratio at (where is the linear polymer weight fraction) due to ring-linear threading [9].
Polymer processing generally involves strong flows, where the coupling of the architecture and deformation complicates the idea of suppressed entanglements in pure ring melts at equilibrium. Filament stretching rheometry has shown that ring polymer melts in the uniaxial extensional flow thicken at unexpectedly low strain rates [14], a phenomenon which has been shown by MD simulations to be caused by topological linking [15]. Ring linking has also been observed in melts under shear, although the effects on shear viscosity are less pronounced than in extension [9,16–18]. The effect of the blend ratio is also relevant in the flow. MD simulations show that the shear viscosity is independent of the blend ratio when melts are exposed to high shear rates [9], whereas in extension threading-unthreading, transitions lead to stress overshoots [19].
In contrast to melts, topological constraints are weaker in solutions [6,7]; the coupling of HI and EV with polymer architecture becomes important, particularly, in strong flows [20,21]. In the dilute limit, equilibrium ring polymer dynamics and conformations have been widely studied by single molecule experiments [22], theory [23], and simulation [24,25]. In the planar extensional flow (PEF), ring polymers exhibit a delayed coil-stretch transition due to intramolecular hydrodynamics that drive the ring to stretch in the flow-neutral direction into an open loop conformation [26,27]. In the shear flow, rings undergo tumbling as observed in linear polymers [28,29], as well as tank-treading dynamics as seen in vesicles [30,31]. In the more general case of mixed flows, rings exhibit both tumbling and stretching behavior [32]. Overall, rings in the dilute solution demonstrate unique conformational dynamics and quantitatively different rheological responses as compared to linear polymers.
Semidilute polymer solutions incorporate the physics of both the melt and dilute regimes, namely, entanglement or topological constraints and intramolecular and intermolecular interactions due to excluded volume and solvent-mediated hydrodynamics [6,7]. At equilibrium, the influence of the chain architecture in the pure solution is primarily quantitative, as ring and linear polymers demonstrate similar scaling of dynamic and static properties with the concentration and molecular weight [33]. However, blends of ring and linear polymers in the semidilute solution can display qualitatively different dynamics, particularly above the entanglement concentration as traditionally defined for linear polymers [7]. Single molecule studies on the diffusion of trace rings in a background of semidilute linear polymers have shown a scaling with the concentration lower than that of the pure linear solution prediction, suggesting ring-linear threading inhibits ring diffusion in a manner not described by reptation theories [34]. Further studies found that as the blend fraction of ring polymers decreased from a primarily ring to primarily linear polymer solutions, the diffusion of ring polymers decreased markedly [35]. Monte Carlo simulations found good qualitative agreement with this trend, attributing the slower dynamics to ring-linear threading [35]. This is supported by MD melt simulations, which show that ring-ring threadings are significantly less probable and have a weaker effect on ring dynamics as compared to ring-linear threads [16]. Notably, slow ring dynamics are most apparent above the entanglement concentration , which for 48.5 kbp -DNA is related to the overlap concentration as [36,37]. At lower concentrations, the dependence on the blend fraction is less pronounced [35].
The flow dynamics of semidilute solutions of pure rings or ring-linear polymer blends are still not well understood. In particular, it is not clear if the application of the flow introduces topological constraints or strong solvent-mediated HI, which are absent at equilibrium. Recently, Zhou et al. performed single molecule experiments on ring polymers trapped at the stagnation point of the planar extensional flow in background solutions of linear polymers at , , and [38]. At , ring polymer conformational fluctuations were peaked at , where is the dimensionless flow strength on trace ring polymers defined as , is the strain rate and is the longest relaxation time of the trace ring polymer. This is in agreement with the expectation that conformational fluctuations are largest at the critical coil-stretch transition flow rate, as shown in previous experiments and simulations on semidilute linear polymer solutions [39–42], and dilute linear and ring polymer solutions [26,27,32]. At , however, the maximum in conformational fluctuations was shifted to , with only a weak decrease thereafter. Approaching the semidilute regime at , fluctuations increased up to and then plateaued. These results raise questions regarding the nature of intermolecular interactions in nondilute ring-linear polymer blends.
Single molecule experiments and Brownian dynamics (BD) simulations of linear semidilute polymer solutions have already suggested plausible explanations. At , slow-stretching and fast-stretching end-coiled subpopulations emerge upon the startup of the planar extensional flow, leading to broader conformational distributions as compared to dilute solutions [39,40]. The authors suggested this could be due to flow-induced intermolecular hooks which form between folded and end-coiled conformations. Another BD simulation study at similar conditions found both broader conformational distributions at and transient intermolecular hooks, although hooks were rarely found at [42]. Simulations also revealed a population of linear polymers which interconverted between coiled and stretched states at moderate flow rates , whereas linear polymers in the dilute solution remained fully stretched [42,43]. The slow-stretching dynamics and retraction were assigned to intermolecular HIs, but a detailed mechanism was not proposed. Coarse-grained BD simulations consider an implicit solvent, facilitating simulation of the relevant time and length scales in single molecule experiments. BD simulations also accurately resolve the time scale separation of momentum and mass transport at low Reynolds number, which is challenging in simulations using explicit solvent (MD) and quasiexplicit solvent (dissipative particle dynamics, multiparticle particle collision dynamics) [44–46].
In this work, we utilize BD simulations to study the influence of the planar extensional flow and blend composition in semidilute solutions of ring-linear polymer blends. We consider solutions at the overlap concentration while increasing the flow rate through the coil-stretch transition, , and varying the blend composition from a pure ring polymer solution to a trace ring in a linear polymer background solution. We compare directly to single molecule experiments detailed in Part II [47]. The experiments reveal unexpected trends in ring dynamics with the blend ratio and strain rate, which are reproduced in simulation and explained on the basis of intermolecular interactions.
The article is organized as follows: In Sec. II, we describe the simulation method and experimental procedure. In Sec. III, we quantify the conformational dynamics and solution rheology. Ring polymers are found to exhibit large conformational fluctuations that are sensitive to the blend ratio. We further investigate the origin of ring conformational fluctuations in Sec. IV. We find that intermolecular ring-linear polymer hooks lead to overshoots in ring extension on the startup of the flow, and intermolecular HIs lead to large fluctuations in extension at the steady state. Finally, we summarize our results and highlight topics for future study in Sec. V.
II. METHODS
A. Simulation governing equations
We perform BD simulations of semidilute ring-linear polymer blend solutions in a planar extensional flow. The simulations consist of ring polymers and linear polymers each with the same number of coarse-grained beads per chain . The total number of beads is then . The position of a bead is updated according to the Langevin equation
Tildes denote dimensionless quantities. Positions are normalized by the bead radius (), energies by the thermal energy [], times by the single-bead diffusion time [, where and is the solvent viscosity], and the diffusion tensor by the drag coefficient of the spherical polymer beads []. Polymer beads experience a flow via the block diagonal tensor , which has diagonal blocks given by the solvent velocity gradient tensor . For the planar extensional flow
where is the dimensionless strain rate. Beads interact via a potential consisting of bonded and excluded volume contributions. We use a finitely extensible nonlinear elastic (FENE) spring force for connectivity,
where is the spring constant, gives the strength of EV interactions, and is the diameter of a bead. The maximum extension of a spring is , and is the distance between two connected beads. Excluded volume interactions are modeled by a shifted, truncated, purely repulsive Lennard–Jones potential known as the Weeks–Chandler–Andersen (WCA) potential [48]
where is the Heaviside function. This EV potential yields chain statistics representative of a good solvent. We find from the Zimm scaling relation and relaxation time data from equilibrium single chain simulations, in agreement with the result for a polymer in good solvent [6,7]. This model has been widely utilized to study polymer dynamics in the solution and melt and has been shown to prevent chain crossings in simulations of entangled melts in the extensional flow [49].
Solvent-mediated HI and Stokes drag are included via the diffusion tensor, given here by the Rotne–Prager–Yamakawa (RPY) tensor [50,51]
where is a unit vector in the direction of and is the identity matrix. The average and first moment of the Brownian noise are given by the fluctuation-dissipation theorem as and , respectively. Simulation implementation requires the decomposition of the diffusion tensor as so that the Brownian noise can be computed via , where is a Gaussian random variable with mean 0 and variance . In traditional BD simulations, evaluation of the Brownian noise is a computational bottleneck, with the cost scaling as depending on the algorithm [52–55]. To bypass this expense, we use the iterative conformational averaging (CA) method [42,56,57]. A brief description of the method and extension to the case of ring-linear polymer blends is given in the supplementary material [58], and a more detailed derivation and verification can be found in the authors’ previous works [42,56,57].
Polymers are simulated in an initially rectangular simulation cell of volume . The initial cell dimensions in the extension and compression directions are and , respectively, which must be equal due to the use of Kraynik–Reinelt boundary conditions for the deformation of the cell with the flow [59,60]. We specify the cell size in the neutral direction to be smaller than and so that the cell dimension in the extension direction is larger. This reduces finite size effects arising from polymers interacting with their own periodic images. A similar approach has been used in simulations of polymer melts in the planar extensional flow, which found that results from the rectangular cell simulation were in quantitative agreement with results from a cubic box simulation [61]. The cell volume is determined by , where is the polymer concentration. We set the concentration via the normalized value , where is the overlap concentration. This defines the overlap with respect to the dilute linear polymer radius of gyration . We have adopted this definition for consistency with the single molecule experiments [38]. As a result, the effective normalized concentration decreases with increasing ring polymer blend fraction due to the smaller radius of gyration of the ring. The difference between the equilibrium sizes of ring and linear polymers is considerable ( versus ), suggesting a change in the effective concentration may be important. However, we have performed simulations of pure ring polymer solutions at based on the ring polymer radius of gyration and found the results to be nearly quantitatively consistent with those presented here for , which use . All following references to the overlap concentration indicate the value for the pure linear solution , and tildes are dropped because only the normalized concentration is used.
We consider solution blends at the overlap concentration for a range of linear polymer fractions (trace ring in a linear background solution) to (pure ring solution) and flow rates . The ring polymer fraction controls the blend ratio and is defined as . We define the ring polymer Weissenberg number , where is the longest ring-linear polymer relaxation time. We consider the single exponential ring relaxation time at the relevant blend fraction, which is determined as described in Sec. III A. The number of polymers in the simulation box and the resulting box dimensions are given in Table I. Note that simulations at use a smaller box size for computational efficiency, as only one ring polymer trajectory is gathered per simulation run. We have also performed simulation runs at using the same larger box dimensions as for . We find the linear polymer dynamics agree quantitatively between the larger and smaller boxes, so to study ring polymer dynamics, we use the latter. A smaller simulation box size is also used for because the contour length of ring polymers is half that of linear polymers.
fR . | nR . | nL . | . | . | nrun . |
---|---|---|---|---|---|
1 | 34–64 | 0 | 108.3–148.5 | 90.0 | 3 |
0.83 | 61–106 | 13–22 | 151.1–199.3 | 100.0 | 3 |
0.5 | 37–64 | 37–64 | 151.1–199.3 | 100.0 | 3 |
0.17 | 13–22 | 61–106 | 151.1–199.3 | 100.0 | 3–5 |
0.02 | 1 | 39–62 | 124.6–156.3 | 80.0 | 40 |
fR . | nR . | nL . | . | . | nrun . |
---|---|---|---|---|---|
1 | 34–64 | 0 | 108.3–148.5 | 90.0 | 3 |
0.83 | 61–106 | 13–22 | 151.1–199.3 | 100.0 | 3 |
0.5 | 37–64 | 37–64 | 151.1–199.3 | 100.0 | 3 |
0.17 | 13–22 | 61–106 | 151.1–199.3 | 100.0 | 3–5 |
0.02 | 1 | 39–62 | 124.6–156.3 | 80.0 | 40 |
Polymer conformations are initialized following a procedure inspired by simulation of ring-linear polymer blend melts [9]. Rings are introduced as randomly oriented circular ellipses on a cubic lattice with spacing greater than the diameter of the rings. This ensures that rings are initially nonconcatenated. The number of beads is generally greater than intended because the box is cubic and the lattice is filled. Rings are randomly removed until the target number of beads is reached. Rings are then relaxed from their circular conformations in a freely draining (FD) simulation for a duration corresponding to the FD ring relaxation time determined from dilute solution FD simulations. At this point, the concentration is lower than intended due to the large initial lattice spacing, so we decrease the box size to the target dimensions. The ring polymers are further relaxed for before rings are removed and replaced with random-walk nonoverlapping linear polymers to reach the target blend ratio. Finally, the system is allowed to relax for another corresponding to the dilute solution FD linear polymer relaxation time.
By this procedure, we aim to reach an accurate equilibrium conformation for a ring-linear polymer blend solution. As discussed in Sec. IV A, the initial probability of a linear polymer threading a ring is significant to the transient dynamics on the startup of the flow. Unfortunately, simulation studies on the equilibrium conformations, dynamics, and threading probability of ring-linear polymer blends in the solution are limited, and existing results focus on concentrations . The polymer density at is relatively low (), so we assume that our procedure provides accurate equilibrium conformations and continue to out-of-equilibrium dynamics and rheology, which are the focus of this work.
Initialization is followed by a production run including the flow and HI. Kraynik–Reinelt boundary conditions (KRBCs) [59] are implemented such that the simulation cell deforms consistently with the applied flow. We follow the algorithm of Todd and Daivis [60], which allows for unrestricted strain accumulation. Hydrodynamics are accounted for using an Ewald sum [62,63], which overcomes the slow convergence of the RPY tensor by splitting the sum into exponentially decaying real space and reciprocal space parts. Excluded volume interactions are accelerated using a cell list generalized for the homogeneous linear 3D flow [64]. As the simulation progresses, the accumulated Hencky strain is given by the applied flow rate . We simulate until a total strain , after which the flow is halted and the box remains in the conformation at the cessation flow time . We then simulate relaxation dynamics for . The simulation is advanced by explicit Euler integration of the Langevin equation using a time step of .
B. Experimental methodology
To prepare ring-linear polymer blend solutions, small amounts of 45 kbp circular DNA molecules are first fluorescently labeled with an intercalating dye (YOYO-1, Molecular Probes, Thermo Fisher) with a dye-to-base pair ratio of 1:4 for h in dark at room temperature. Trace amounts of fluorescently labeled 45 kbp DNA are then added to background solutions of unlabeled 45 kbp semidilute ring-linear DNA blends. Details regarding the preparation of 45 kbp circular DNA and semidilute ring-linear DNA blend solutions are described elsewhere [22,38,47].
Single molecule fluorescence microscopy and imaging is performed using an inverted epifluorescence microscope (IX71, Olympus) coupled with an electron-multiplying charge coupled device (EMCCD) camera (iXon, Andor Technology) as described in detail before [36,65]. In brief, labeled DNA blend solutions are introduced into a particle desorption mass spectrometry (PDMS)-based microfluidic cross-slot with 300 m in width and 100 m in height. A 50 mW 488 nm laser directed through a 2.2 absorbance neutral density (ND) filter (Thorlabs, NJ, USA) is reflected by a 488 nm single edge dichroic mirror (ZT488rdc, Chroma) and used to illuminate the labeled DNA molecules. Fluorescence emission is collected by a 1.45 NA, oil immersion objective lens (UPlanSApo, Olympus) followed by a tube lens and a 525 nm single-band bandpass filter (FF03-525/50-25, Semrock) in the detection path. Fluorescence images are acquired by an Andor iXon EMCCD camera ( pixels, pixel size) under frame transfer mode at a frame rate of 33 Hz (). Additional details regarding the experimental methods can be found in Part II [47].
C. Comparison between simulation and experiment
Simulation variables are matched to experimental conditions as possible, and generally, we find good qualitative agreement. However, quantitative comparison remains challenging due to computational expense and availability of appropriate models. First, we use a flexible chain with a FENE-WCA force law, as compared to the wormlike force-extension behavior of DNA. Polymer stiffness influences the extensional rheology of polymer solutions [66]. The FENE-WCA force law was used for convenient implementation of topological constraints on the length scale of an individual Kuhn segment. Generally, WLC models used in simulation are coarse-grained [67], which is not sufficient for capturing hooking behavior. WLC models on the level of an individual Kuhn segment have been developed [68,69], but they are challenging to implement with steep LJ excluded volume potentials to prevent spring crossings. Alternative algorithms for enforcing topological constraints such as spring-spring repulsions [70] or slip-links [71–73] may be useful, but we have not explored them here. Ultimately, the goal of the simulations is to determine the effect of topological constraints and intermolecular HI on ring-linear blend dynamics, both of which are achieved by our model. We show that these are the origin of ring extension fluctuations observed in experiment, although the simulations cannot quantitatively reproduce experimental measurements.
Second, simulations consider relatively short chains with Kuhn segments per chain as compared to for 45 kbp ring DNA and -DNA (48.5 kbp). Simulations are limited to short chains because of the size of the box, with the current systems using . Higher molecular weight chains would require larger systems, which are intractable due to the computational scaling of the CA method. BD algorithms with improved computational scalings of [74] or [75,76] may help in overcoming this limitation, but they have not been implemented in the CA method. Prior work has shown that even with the lower molecular weight, simulations still capture the same qualitative trends as experiments [27,42,77].
Finally, simulations use periodic boundary conditions in a homogeneous unbounded flow. The flow kinematics in a cross-slot clearly differ, as previous work has shown an asymmetric unsteady flow of synthetic flexible polymers, which is sensitive to the channel shape [78–80], channel aspect ratio [81,82], polymer concentration, and molecular weight [79,81]. However, flow instabilities have not been reported for DNA solutions in cross-slot devices [38,39], which is confirmed in Part II to the current study [47]. The higher persistence length of DNA may lead to lower solution elasticity, suppressing the instability entirely or delaying it to high Wi. Molecular simulations of polymers in a cross-slot microfluidic device may be able to resolve this issue [83], but available algorithms are generally limited to dilute solutions due to computational expense [84].
III. RESULTS
To investigate polymer dynamics, we primarily consider the fractional extension in the flow direction, . In simulation, the extension is . For linear polymers, the contour length is , whereas for ring polymers, due to the closed loop constraint. In experiment, the extension can be directly visualized and normalized by the ring contour length m.
We also probe the solution rheology via the reduced extensional viscosity, in which we have normalized by the monomer concentration to account for the linear concentration dependence. For dimensional consistency, we introduce a reference concentration ,
where is the polymer contribution to the extensional viscosity
and is the polymer contribution to the stress tensor determined by the Kirkwood formula [6]
is the conservative force between particles and in the direction.
A. Relaxation after flow cessation
The longest polymer relaxation time is determined by fitting a single exponential to the linear entropic regime [21] after cessation of the constant strain rate flow following an applied strain . Figure 1 shows the ensemble average relaxation for varying blend ratio determined from simulations. In all cases, we find a good fit to , where and are the average extension at times after flow cessation when the ring has fully relaxed. The resulting ring polymer relaxation time normalized by the dilute limit value is plotted versus the blend ratio in the inset and compared to results from single molecule experiments. We find the relaxation time decreases weakly with blend fraction of rings . Simulations agree with experiments to within the stochastic distribution of single molecule relaxation times.
We fit the linear polymer relaxation trajectories in the same way and find a similar dependence on blend fraction. Generally, for the same molecular weight, the linear polymer relaxation time is larger than () because rings are topologically constrained such that they cannot satisfy the lowest order Rouse mode boundary condition [26,27]. We primarily refer to the Weissenberg number as defined using the ring polymer relaxation time to describe ring dynamics. However, when considering the solution average flow properties of blends, there are a spectrum of relaxation modes associated with the two components. Thus, we also report the linear polymer relaxation time when appropriate, such as in the solution flow modification for a trace ring in a semidilute linear background (Sec. IV B 4). It may be useful to determine a nominal relaxation time from the decay of solution average properties including the extensional viscosity and the birefringence, but in this study we consider only the polymer conformational relaxation time.
B. Transient molecular conformations
Next, we investigate the transient conformations of ring polymers in the startup and steady state planar extensional flow. In Fig. 2, we present BD simulation results at a fixed strain rate and decreasing blend fraction of rings . The ring polymer Weissenberg number is approximately constant, with slight variations because the ring polymer relaxation time decreases with the ring blend fraction.
For a pure ring solution, polymers stretch in the flow direction and then exhibit small fluctuations around the steady state average. The ensemble average extension reaches a constant at . This steady state is achieved faster than in the case of dilute or semidilute linear polymer solutions, consistent with previous experiments and simulations of dilute ring polymer solutions [26,27]. The faster rate of stretching of ring polymers is ascribed to the lack of free ends, making the slow-stretching folded pathways observed for linear polymers less accessible to rings. Instead, rings stretch primarily via the faster dumbbell and half-dumbbell conformational pathways. Once the steady state is reached, the dynamics are consistent with previous semidilute linear polymer solution simulations [42].
For blends of ring and linear polymers, we find markedly different behavior. While the ensemble average fractional still plateaus at , a subpopulation of rings stretches significantly beyond the average to . This behavior is most noticeable upon the startup of the flow, although for majority linear polymer blends, rings can also reach highly stretched conformations at the steady state. Additionally, after the steady state average extension is reached, rings can retract back to equilibrium levels of extension . The extension of individual rings fluctuates significantly in time, consistent with the authors’ previous [38] and current experiments [47]. These fluctuations grow in magnitude as the blend fraction of rings decreases, which we quantify in Sec. III C.
We also present results from experiments at similar conditions in Fig. 3, where and . The majority ring polymer solution is consistent with the simulation results. Rings stretch to the steady state average and exhibit small fluctuations. As the blend fraction of rings decreases, large fluctuations emerge as seen in simulation. There are quantitative differences in the magnitude of fluctuations, the transient response, and the steady state plateau value, which we ascribe to the differences between simulation and experiment discussed in Sec. II C. Thus, we primarily compare simulations and experiments on the basis of trends in fluctuations with Wi and blend ratio. The experimental results are analyzed and discussed further in the companion paper [47]. In particular, temporal correlations in extension and changes to the coil-stretch transition are investigated.
C. Average conformational fluctuations
We quantify the conformational fluctuations described above via the steady state ensemble average fluctuation quantity
where is the ensemble size, is the accumulated strain at which the ensemble average fractional extension plateaus, and corresponds to flow cessation. We thereby remove effects of initial transient stretching. This definition is consistent for both ring and linear polymers, with the linear steady state strain , as compared to for the rings.
In Fig. 4, we report the fluctuation quantity as a function of Wi for a variety of architectures and blend ratios as determined from simulation and experiment. In all cases, the dimensionless flow rate Wi is determined using the relaxation time upon cessation of the planar extensional flow at the relevant concentration and blend ratio. In addition to the simulations and experiments presented in this work, we have included results for the case of a pure linear solution at and a dilute ring polymer solution from previous works [39,42].
In simulation, the pure linear solution undergoes a maximum in the fluctuation quantity at , after which decreases. This is expected because conformational fluctuations are largest at the coil-stretch transition [85]. For dilute polymer solutions and semidilute solutions performed in the previous work [42], we find consistent behavior with slight quantitative shifts (supplementary material Fig. S1) [58]. The fluctuation quantity for pure linear solutions determined from experiment is consistently peaked at low Wi, although quantitatively smaller.
Dilute ring polymer solutions exhibit suppressed conformational fluctuations as compared to pure linear polymer solutions, and there is no clear peak at . We attribute this to the constrained conformations of the ring and note that conformational fluctuations also remain suppressed for semidilute pure ring polymer solutions. Fluctuations are larger than the dilute case due to intermolecular HI but are largest at , and both are lower than the linear polymer case. The semidilute ring polymer solution plateaus at high Wi and exhibits behavior similar to the pure linear solution in this limit.
A distinct departure from the behavior of either pure linear or ring polymer solutions is observed in the case of ring polymers in ring-linear semidilute blends. For all blend ratios presented here, fluctuations are not peaked at . Instead, they increase up to , with a weak decrease thereafter. Furthermore, fluctuations increase as the blend ratio shifts towards linear chains from to , confirming the visual observations of molecular trajectories in Figs. 2 and 3. Simulation results show that most of this increase occurs from to . As more linear chains are added, further increases in fluctuations are small. This is largely consistent with experiments, which also show increasing with blend fraction of linear polymers.
To study the influence of HI, we perform “freely draining” (FD) simulations which neglect HI for semidilute solutions at blend ratios . The relaxation time used to define is the Rouse relaxation time. Because the Rouse time is greater than the Zimm relaxation time obtained with HI [6,7], the strain rate is reduced to obtain the same values of . In the absence of HI, ring fluctuations are significantly suppressed, as shown by the open points in Fig. 4(a), which are overlapping with the dilute ring fluctuations (green crosses). Additionally, there is no blend ratio dependence in semidilute FD simulations. The quantitative agreement between semidilute blends without HI and dilute solutions with HI suggests that there are minimal intermolcular interactions in FD simulations. This is consistent with previous BD simulations, which have shown FD simulations exhibit weak concentration dependence in the planar extensional flow [41,42]. We provide a physical mechanism for enhanced ring conformational fluctuations on the basis of intermolecular HI in Sec. IV B.
As compared to the ring polymer component of the blends, the linear polymer component exhibits conformational fluctuations nearly quantitatively consistent with the pure linear semidilute solution case (supplementary material Fig. S1) [58]. There is a slight quantitative increase in fluctuations with linear polymer fraction, but the trend is weak compared to the ring polymer case. Thus to the knowledge of the authors, the overshoots in ring extension on the startup of the flow and the fluctuations at the steady state appear unique to rings in semidilute blend with linear polymers.
D. Steady state conformations and rheology
The steady state conformations and extensional viscosity of dilute polymer solutions are well understood for linear and ring architectures [26,43]. Both undergo a transition from an equilibrium coil to a stretched conformation at , although the ring transition is more gradual due to intramolecular hydrodynamics [27]. In unentangled solutions, the extensional viscosity is dominated by polymer stretching. The large fluctuations in extension observed for ring polymers in semidilute blends motivate study of the effect of the blend ratio on the ensemble average stretch and bulk viscosity.
In Fig. 5(a), we plot the ensemble average steady state ring fractional extension after versus the blend ratio and . We also include results from pure linear solutions at for comparison. The data for the linear component of the blend is not shown because the linear polymer relaxation time is larger than the ring relaxation time, . Thus the effective linear polymer Weissenberg number at the same strain rate is higher, and the linear chains are stretched for all strain rates presented here. We first observe that the more gradual coil-stretch transition found in the dilute solution [39] persists in semidilute solution. This is expected because HI is nominally unscreened at the overlap concentration, and intramolecular HI drives ring extension in the neutral direction [27]. The open ring conformation is significant to both topological interactions and intermolecular HI, as shown in Sec. IV.
Considering the effect of blend ratio, the average extension curves collapse nearly quantitatively. This suggests that the dominant contribution to the average stretch is only the dimensionless flow strength . In Sec. III E, we argue this is consistent with the large transient fluctuations. In particular, we show how intermolecular HI and topological interactions can drive instantaneous retraction and extension of the ring polymers.
We consider the influence of the blend ratio on steady reduced extensional viscosity in Fig. 5(b). As expected, viscosity increases with deceasing fraction of rings because the stress in unentangled polymer solutions is dominated by stretching. Linear polymers are more stretched than rings at the same strain rate, so as decreases, the linear chain contribution to the polymer stress dominates. When we plot viscosity against at a constant strain rate (inset), we find a nearly linear relationship, suggesting the bulk viscosity is determined by simply mixing the linear and ring polymer contributions. This is supported by plotting the ring and linear contributions to the extensional viscosity separately and normalizing by the number of molecules of that identity in the solution (supplementary material Fig. S2) [58].
E. Conformational distributions
We conclude our characterization of ring polymer conformations with probably distributions of fractional extension, , in the steady and startup flow. Conformational distributions have been widely used to quantify molecular individualism in the dilute solution. Currently, we investigate the effect of intermolecular interactions on molecular individualism.
In Fig. 6, we plot the steady state distributions of ring polymer extension for approximately fixed and varying blend ratio . Results for blend fractions and (trace ring in a linear background) exhibit near quantitative matching with and have been omitted for visual clarity. At low flow rates , rings are relatively unperturbed from their equilibrium conformations, and the distribution is relatively insensitive to the blend ratio. The linear chains are moderately stretched to because the effective linear flow strength is . However, given the small change in ring conformations, it appears that interactions with linear polymers do not affect ring dynamics in the weak flow.
When exposed to stronger flows, , rings are stretched from their equilibrium conformations. Notably, distributions broaden with decreasing fraction of ring polymers for all flow rates . For comparison, we include distributions for linear polymers in a nearly pure linear blend () at matched effective flow strength , which clearly shows that the conformational distributions of ring polymers in pure ring solutions agree with those of linear polymers. Specifically, distributions become narrower with increasing flow strength. This is not the case for rings in blends with linear polymers, where distributions are broadest at , and broader than the pure polymer solution cases at and . While the low extension tail is similar for all architectures and blend ratios, ring polymers in blends exhibit a high extension tail that becomes more pronounced with decreasing .
Transient conformational distributions are shown in supplementary material Fig. S3 [58]. They are largely consistent with the steady state results, broadening with decreasing . They also show a small population of highly stretched rings at for corresponding to the extension overshoots. In the remainder of this work, we seek to understand the dynamics of ring polymers in blends with linear chains on the basis of transient intermolecular interactions.
IV. DISCUSSION
We consider two mechanisms for ring conformational fluctuations: (i) intermolecular topological constraints in which a ring polymer is “hooked” or “threaded” by a linear polymer or another ring (ii) intermolecular hydrodynamic interactions that fluctuate in space and time with the local concentration of linear and ring polymers. As discussed in the Introduction, the first mechanism is well motivated by the observation of unique dynamics and rheology in ring polymer solutions and melts from bulk rheology [8,14], single molecule experiments [34,35], and molecular simulation [13,15]. A focus of this work is to determine if the flow increases the frequency and importance of ring-linear threading such that the ring dynamics are significantly altered, despite the fact that equilibrium ring dynamics at appear to be unaffected by threading [35]. To understand the effect of HI, we visualize the flow as a function of time and make direct connections to fluctuations in ring polymer conformations. We find that flow modification is essential to understanding the polymer dynamics.
A. Intermolecular hooking
We observe three types of topological interactions: ring-linear hooks, ring-ring hooks, and linear-linear hooks. We find ring-linear hooks to be the most common. Linear-linear hooks are less common and thus require a larger ensemble to quantify. We use data from simulation of pure linear polymer solutions at and previously published by the authors [42] while forgoing the blend cases due to insufficient sampling. Ring-ring hooks are the least common such that we are unable to quantify their frequency. We include an observation of ring-ring hooking and a short discussion in supplementary material Fig. S4 [58].
1. Observation of a ring-linear hook
We first show simulation snapshots of a ring-linear hook to provide a qualitative description of the conformational dynamics. For examples of linear-linear hooks, we refer to our previous work [42]. A linear polymer is loosely threaded through a ring polymer upon the startup of the flow [Fig. 7(b)]. At equilibrium, the excluded volume force between the ring and linear polymer is weak due to the low concentration. At low strain , the polymers have not yet collided so the ring stretches at approximately the same rate as the ensemble average [Fig. 7(c)]. Upon further strain accumulation, however, the crossing constraint sets in, and the linear chain adopts a folded conformation around the outside loop of the ring, causing it to retract and reorient [Fig. 7(d)]. The ring then becomes fully reoriented and overshoots the ensemble average fractional extension before the hook is released and the ring retracts to average levels of extension [Figs. 7(e) and 7(f)].
For demonstrative purposes, we have highlighted a trajectory in which the ring both retracts and stretches due to the topological constraint. However, this is a rare occurrence. The majority of ring-linear hooks involve a linear polymer threaded “though” the ring (supplementary material Movie I) [58] rather than “around,” in which case the initial retraction does not occur. Additionally, in this example the linear polymer is already threaded with the ring upon the startup of the flow. This is the case in the majority of hooks we observe, although it is not required. In supplementary material Movie I [58] we include a trajectory in which an initially unthreaded linear chain adopts a folded conformation, advects into the closed contour of the ring, forms a topological hook that causes an overshoot in ring extension, and then advects away from the ring once the linear chain becomes fully stretched and the constraint is released.
We note that rings tend to hook only with linear chains that adopt “folded” or “dumbbell” conformations [86]. Linear chains adopting “kinked” or “coiled” conformations lack a hooked structure at their free ends which may advect into the ring. These latter conformations can still thread through the ring, but in this case the excluded volume force is weak because the low polymer concentration allows the ring to deform and relax the constraint. Thus, there appears to be aspects of “molecular individualism” as first considered for dilute solution polymer stretching which are relevant in the semidilute case. Due to limited sampling and high computational expense, we are unable to study these problems in further detail here, although there may be similar instances of “molecular predestination” [87].
2. Quantifying hooking behavior
We now establish a procedure for detecting hooks and quantifying how often they occur. For the ring-linear and linear-linear hooks, we consider a combination of topological strand crossings and excluded volume interactions between hooked chains. In particular, we use the writhe for two polymer chains and ,
where the line integrals over the continuous polymer curves and are approximated by the discrete bead positions. In the case of a ring, the curve is closed, whereas for a linear chain it is open. While the writhe gives a measure of topological crossings, we are primarily interested in cases where these threads drive changes in the polymer conformation through excluded volume interactions. Thus, we also consider the flow-direction total excluded volume force between the two chains
with the excluded volume force between segments given by Eq. (4). We set a threshold writhe and excluded volume force , which when both are met indicate the presence of a hook. We then determine the writhe and excluded volume force between all chains on a pairwise basis for the simulation trajectories presented in the previous section and assign them a hook status as a function of time.
We note that it is challenging to detect ring-ring hooks in this procedure because one half of the penetrating ring will form a positive crossing and the other half a negative crossing, yielding a writhe of zero. Instead, we use only the excluded volume condition for ring-ring hooks and confirm by visual observation. We find ring-ring hooks are nearly negligible at , in agreement with equilibrium melt simulations showing ring-ring threads are significantly less probable than ring-linear threads [16].
The topological constraint analysis reveals that once linear chains are fully stretched, ring-linear hooks are negligible. We explain this by the fact that a linear chain must have a significant end retraction of at least 1/3 its steady state extension to be able hook with a ring as in the startup flow case. As shown in Fig. 4 and supplementary material Fig. S1 [58], conformational fluctuations of linear polymers for are small due to the large flow gradient across their span. Because of the difference in ring and linear polymer relaxation times (), the strain rates applied to the blends correspond to . Therefore, we focus on the startup of the flow to . In particular, we consider the number of ring-linear hooks per ring polymer, defined as
where the average is taken over time for the ensemble of ring-linear pairs at a given the blend fraction and strain rate. The first summation is taken over the number of independent simulation runs. This definition accounts for the possibility of multiply-hooked rings, although they are not found in our simulations.
Figure 8 shows the results of the procedure as a function of the flow rate and blend fraction. First, we note the small quantitative values, reaching a maximum of for the case of a single ring in a linear background, indicating that at a given time during the startup of flow, only 3% of rings are hooked. Therefore, it appears that topological interactions alone cannot explain the large ring conformational fluctuations observed in simulation. Detailed quantitative study of the transient evolution of hook density and duration remain challenging, although several trends emerge.
A clear result is that the average number of hooks increases with blend fraction. This is expected, as rings form hooks with linear chains more readily than other rings. Majority ring polymer blends exhibit nearly the same number of ring-linear hooks as linear-linear hooks in a pure linear polymer solution at the same concentration. For majority linear polymer blends , the average number of hooks increases by as much as a factor of 5 at low flow rates. We emphasize that is determined on a per ring basis, such that blends at lower do not necessarily exhibit a larger number of ring-linear hooks per solution volume. Despite this trend, there is no measurable overshoot in the ensemble average ring extension at any blend fraction, suggesting hooking interactions are emergent at , but not dominant.
Another clear trend is the decreasing number of ring-linear hooks for solutions at with the flow rate. This is in distinct contrast to the pure linear polymer solution at . We suggest that a crossover in the behavior of topological constraints in strong flows occurs in the range of . At , linear polymers threaded through a ring upon the startup of the flow tend to become fully stretched on a faster time scale than a hook forms for . Only initial configurations which are “predestined” to hook due to the threading of a folded linear polymer through a ring, for example, in Fig. 7, form constraints. At lower flow rates, linear chains remain relatively coiled, allowing the constraint time to deform the ring. In the pure linear polymer solution at , the stretching of polymers to escape the constraint is limited by the surrounding chains. The entanglement concentration for the linear polymer solutions is 8-10 , and the equilibrium diffusion follows unentangled scaling at [57].
We have not considered the magnitude of excluded volume force imposed by the constraint or the resulting increase in spring forces. Further studies with higher molecular weight polymers may reveal the functional effect of ring-linear hooks upon ring conformation and solution stress.
B. Flow modification by intermolecular hydrodynamic interactions
To explain the ring conformational fluctuations not caused by ring-linear hooking, we consider fluctuations in the effective flow due to the polymer disturbance velocity. We highlight several observations of rings exhibiting large fluctuations in extension and visualize the flow surrounding their centers of mass, defined as
where is the displacement from a tagged ring center of mass , , and and are the positions and total conservative force, respectively, of polymer bead . The first term accounts for the applied planar extensional flow in the frame of reference of the ring center of mass. Because the applied flow is homogeneous and unbounded, we can define a new origin to provide a more intuitive flow field without qualitatively changing the flow measurement. The second term accounts for the polymer disturbance velocity where the sum is over polymer bead indices, and the prime indicates that beads on the tagged ring are excluded. Intramolecular HI, or the ring’s response to the flow, are excluded in order to visualize the forces which drive ring fluctuations.
We observe several characteristic motions we refer to as (i) overstretching (ii) retraction (iii) tank-treading. The first two cases refer to fluctuations in fractional extension more than the three times average fluctuation quantity quantified in Sec. III C, , either above or below the steady state average, respectively. The third motion refers to rotation of the ring along its contour in the flow-neutral -direction.
We evaluate on a uniform rectilinear mesh grid at locations surrounding the ring center of mass. We find that snapshots of the flow field on the time scale of a single time step are noisy due to thermal fluctuations. To overcome this, we perform additional simulations which sample the disturbance velocity every 50 time steps for an interval or . Polymer advection is minimal on this time scale and the resulting streamlines are a close approximation to the instantaneous flow. The flow sampling increases the computational expense of the simulation by where is a constant associated with evaluating the RPY tensor for a grid point polymer bead pair, and is the number of grid points. As exceeds the simulation becomes computationally expensive, so we consider a volume extending only slightly past the extents of the tagged ring. Specifically, we consider the dimensions of the grid , and larger 2D slices in the flow-compression plane in Fig. 12. The average size of the simulation cell over a deformation period is . For visualization purposes we show only 2D slices of the flow and assume the flow in the direction is zero. This is generally a reasonable choice in the -plane, as the applied flow is planar, although significant gradients in the flow-neutral -direction are possible (Fig. 9). Visualization of the full 3D flow field is an interesting area for further study but is unnecessary for understanding the dynamics of individual ring polymers.
The effective velocity is normalized by a reference value corresponding to the maximum applied flow magnitude on the mesh. For positions further from the ring the applied flow becomes stronger relative to the polymer disturbance, but these flows are not relevant to the ring conformation. We now consider several specific examples of the characteristic motions described above and visualize the surrounding flow fields.
1. Overstretching
In Fig. 10(a), we show the transient fractional extension of a ring in a majority linear blend at which fluctuates around the ensemble average extension. At , the ring becomes highly stretched to . We plot the streamlines for the effective velocity in the -plane at this time superimposed with the ring conformation and selected linear conformations in Fig. 10(b). The effective flow at the ring end is 4.5 times stronger than the applied flow alone, causing the ring to stretch far beyond its average extension. We see that this clearly coincides with the position of a linear chain end. At the opposite end of the ring, the ring is similarly stretched by a linear chain end, although this is not visible in the displayed slice because the ring is slightly stretched in the -direction.
Thus, we find that local fluctuations in the polymer concentration drive flow modifications and determine ring conformational dynamics. In particular, the proximity of linear chain ends to ring “ends” can cause overstretching. While the highlighted linear chain ends do not completely reproduce the total flow, they contribute the essential features of strong extension. We note that only a section of the linear chains are shown. The full conformations extend in the flow direction away from the ring. If we consider the disturbance due to an individual polymer, the importance of the linear chain ends becomes clear. The restoring force on chain segments is the strongest at the ends, while the disturbance at the chain center goes to zero.
2. Retraction and tumbling
Next, we consider an example of ring retraction at . The ring is initially stretched in the flow direction at , at which point a rotational flow field emerges [Fig. 11(b)]. The flow causes the ring to retract and tumble, passing through a minimum in fractional extension at [Fig. 11(c)]. Finally, the flow surrounding the ring returns to approximately planar extension with a stagnation point laterally displaced to [Fig. 11(d)]. The ring then completes reorientation in the flow direction and stretches back to average levels of extension. To facilitate visualization of this process, we have colored one half of the ring conformation gray and the other blue, showing that from to the two halves essentially exchange places.
Not all cases of ring retraction involve end-over-end tumbling. More often, the ring extension decreases by only before restretching. This is due to the degree of flow modification, with weaker retractions corresponding to a mixed flow between rotation and extension, and tumbling corresponding to the rotational flow.
Generally, shear and rotational flows appear to emerge from the superposition of polymer disturbance velocities. In the dilute solution, polymers align along the axis of extension, introducing only symmetric disturbance flows around the hydrodynamic center of resistance. However, these disturbance flows are not necessarily symmetric with respect to the stagnation point. Superposition of the disturbance from multiple chains shows significant deviations from pure extension. Thus, polymers can become unaligned with the axis of extension due to intermolecular HI. This observation is supported by experiments [79] and numerical simulations [80], which report that birefringence decreases with polymer concentration and molecular weight at a fixed Wi. While the origin of this behavior is clear from a continuum perspective, [88,89] the molecular mechanism is not fully resolved. Further study is required to investigate the importance of intermolecular HI, coupled thermal fluctuations, and EV.
3. Neutral direction gradients and tank-treading
In both the overstretching and tumbling cases, we see that the ring is slightly stretched in the flow-neutral -direction. This is not unexpected, as previous simulations have shown that the coupling of the chain architecture and intramolecular HI in rings drives the chain to an open loop conformation [27]. The stretching of the ring is the cause of the mild coil-stretch transition and delay in critical Weissenberg number as compared to linear polymers. In the semidilute case, this may be complicated by the screening of HI, which causes rings to compress in the neutral direction as seen in dilute freely draining simulations [27]. Alternatively, the concentration gradients which lead to the mixed flows seen in the extension-compression plane in Figs. 10 and 11 could introduce flow gradients in the neutral direction which are absent in the dilute case.
We find that flow gradients in the neutral direction lead to ring retraction even when the flow the -plane remains primarily planar extensional. In Fig. 9, we highlight a case where the ring retracts and partially “tank-treads,” meaning the ring rotates along its contour while remaining stretched in the flow direction. We include a simulation movie in the supplementary material [58]. Tank-treading has been reported for dilute rings in the shear flow, where the driving force for rotation is the shear gradient on ring polymers adopting elliptical conformations in the flow-gradient plane [30]. In this work, the dynamics are markedly different. The applied flow is planar extensional, such that there is no component of rotation and the ring is compressed in the direction. The tank-treading motion can emerge only due to a combination of intramolecular HI driving the ring open in the neutral direction and intermolecular HI introducing a driving force for rotation.
The origin of rotation is clearly seen in Fig. 9(b), where the polymer disturbance velocity causes a rotational flow in the (extension-neutral) plane. At a later time, where the ring has rotated around its contour by . The flow then returns to planar extensional. This evolution of the flow field is directly connected to the motion of neighboring chains. In the simulation movie we highlight three linear polymers which primarily drive the flow. At (start of the movie), two linear chains appear overlapping in the extension-compression plane but with a separation in the neutral direction of approximately the ring stretch, . The linear chains are highly stretched with nearly constant positions along their contours. The two linear chains are advecting in opposite directions with respect to the axis of extension due to their center of mass positions in the applied flow. The superposition of their disturbance velocities leads to the rotational field. Once the linear chains have advected away from the ring, their disturbance decays and the rotational field dissipates.
More generally, the role of flow gradients in the direction is challenging to characterize. Tank-treading is rare because the spatiotemporal variations of the flow occur on time scales shorter than the time it takes the ring to rotate along its contour. We conclude that the conformational fluctuations as measured in a coarse-grained sense by the average fluctuations in the fractional extension are due to diverse features of the flow which arise from the polymer disturbance velocity. We now discuss some more general features of deviations from the planar extensional flow and relate them to the dynamics of ring polymers.
4. Deviations from planar extensional flow
The observation of rotational flows in Fig. 11 is a marked change in the flow character as compared to the applied planar extension. To further investigate these profiles, we consider larger slices surrounding the stagnation point in Fig. 12. The method of measuring the flow is the same as Eq. (13), except that the stagnation point is the reference rather than a tagged ring center of mass, and the flow disturbance from all polymers is included. To simplify the discussion, we consider only the results for nearly pure linear polymer solutions (), where the effect of the chain architecture on the solution average behavior is small. Because there are few rings, we use the dimensionless flow strength based on the linear polymer relaxation time, .
We observe several characteristic deviations from planar extension. At moderate flow rates , the stagnation point is displaced from that of the underlying flow. The displacement is primarily in the direction of extension, and smaller displacements are observed in the compression direction. In faster flows , symmetry across the axis of extension is broken and regions of the shear flow emerge. The flow modification is most noticeable near the stagnation point, where the polymer disturbance velocity is large relative to the applied flow. Finally, regions of the rotational flow are also observed [Fig. 12(c)]. Vortices occur within regions of the shear flow and are generally smaller than the shear regions.
These are transient features which are not sustained for more than units of accumulated strain. Once polymers fully stretch, the flow is rarely purely planar extensional, but is rather fluctuating between states similar to those shown in Fig. 12, as shown in supplementary material Fig. S5 [58]. There is no preferred direction of stagnation point displacement, flow asymmetry, or vorticity. In particular, both clockwise (Fig. 11) and counterclockwise [Fig. 12(c)] rotational flows are observed. While these deviations from planar extension are smaller than the periodic simulation cell size , finite size effects may be present because polymers can interact with their own images via long-ranged HI. Therefore, we defer a quantitative characterization of the flow modification to a future study that uses more coarse-grained models to more fully investigate and quantify these transient flows.
Deviations from the extensional flow are perhaps not surprising considering that elastic instabilities have been reported in cross-slot extensional flows of polymer solutions [78,90], although the flow asymmetry is stable and extends to the boundaries of the microfluidic device. Transient stagnation point displacement and rotational flows have also been reported in an optimized-shape cross-slot extensional rheometer, which more closely resemble the homogeneous extensional flow [79,80]. However, the flow kinematics in a cross-slot geometry are different than in the BD simulations presented in this work. In cross-slot devices, only the flow in the cross-channel region is homogeneous extension, leading to inhomogeneous polymer stretching as indicated by a narrow birefringent strand along the centerline [79,80]. The applied flow field in the current BD simulations is unbounded and homogeneous, and polymer stretching is relatively constant throughout the simulation cell. This suggests the shear and rotational deviations observed here may be generic to extensional flows of polymer solutions, regardless of the boundary conditions.
C. Test case: A bidisperse linear blend
The observation that ring polymers exhibit large conformational fluctuations due to size and shape differences with the linear portion of the blend raises the question: What is the influence of the chain architecture? Is there a unique feature of the ring polymers that causes these dynamics, or is it simply because their contour length is half that of the linear chain? To investigate this topic, we have performed simulations of bidisperse linear polymer solution blends of short and long linear polymers. The maximum stretch of the short chains in the extension direction is matched to the rings, , and the relaxation time is comparable ( versus in pure solutions and , respectively, at ). The polymer concentration by mass is matched to the ring-linear blend simulations. We define the mass fraction of short linear chains , and simulations are performed at . Essentially, each ring polymer is replaced with two short linear chains, all chains are initialized as nonoverlapping random walks, and the TEA (Truncated Expansion Ansatz [54]) parameters are modified appropriately. Otherwise, details of the simulation are the same as described in Sec. II. We define a Weissenberg for the short linear polymers , where is the short polymer relaxation time at the appropriate blend ratio and is determined by the same procedure as for the ring-linear blends.
In Fig. 13, we compare the results of ring-linear blends and bidisperse linear blends at varying blend fraction and flow rate Wi, where the relaxation time or at the relevant blend fraction is used. The two systems are in qualitative and, in some cases, quantitative agreement. The primary result is that the fluctuation quantity for the short linear chains follows the trend of the rings. In the pure short linear polymer solution, , is peaked at and monotonically decreases with Wi, in agreement with the reference data [42]. In the bidisperse linear blend , however, the fluctuation quantity matches the pure solution case at , increases up to , and decreases for stronger flows. We also find that the fluctuations are quantitatively larger than the ring-linear blend case. A clear explanation for this behavior is that at low Wi, the dynamics are weakly dependent on blend ratio. By nature ring polymer conformational fluctuations are smaller due to the lack of free ends, so for rings simply starts at a lower value. The end-free constraint is relevant in strong flows as well. For example, short linear polymers in the bidisperse blend can undergo end-over-end tumbling due to flow gradients in the -direction while remaining significantly compressed in the -direction (see supplementary material movie IV [58], for an example at ). This conformational pathway is unavailable to rings, however, which retract weakly or rotate along their contours as seen in Fig. 9, but cannot tumble while fully compressed in the -direction. Instead, rings must swell in the -direction to completely tumble (Fig. 11), a pathway that is suppressed by the compressional component of the applied planar extension.
Pure linear polymer solutions at matched contour length with the rings () are stretched to the same extension as rings at the same Wi. However, the bidisperse linear blend is less stretched. Interestingly, a similar result is obtained in experiment for ring-linear blends at versus . We explain this result by the larger fluctuation quantity for the bidisperse linear blends, which are close to the quantitative values for rings observed in experiment. At high Wi, chains cannot stretch far beyond their average extension due to finite extensibility. Therefore, conformational fluctuations at high Wi correspond to retractions. For sufficiently large , this results in a lower .
The extensional viscosity at both blend ratios matches nearly quantitatively for ring-linear and bidisperse linear blends. This supports our previous conclusion that the stress arises from the polymer stretch. Intermolecular hooking is virtually absent in the bidisperse linear blends , so in both blends the increase in with increasing fraction of linear polymers is due to the higher stretch.
Overall, the bidisperse linear blend results show that the large conformational fluctuations we observe for the ring-linear case may be a more general feature in polymer solution blends and polydisperse solutions. Polydisperse solutions are often modeled with two-state models, where polymers are assumed to be either stretched or coiled based on their relaxation time, and intermolecular interactions are neglected. Our results show that intermolecular interactions in semidilute solutions under strong flows are not screened. In fact, they can lead to qualitatively different dynamics. The introduction of nonlinear polymer architectures further complicates the issue. While we observe topological constraints to be minimal in simulation, they likely play a more important role at higher concentrations and higher molecular weight, as suggested by the larger in the experiment. Even in the absence of topological constraints, the effect of architecture is not trivial. The polymer size and shape play an important role which is challenging to predict a priori, given the large concentration fluctuations present in semidilute solutions.
V. CONCLUSIONS
We have investigated the dynamics and rheology of ring-linear polymer solution blends at the overlap concentration in the planar extensional flow via Brownian dynamics simulations. Simulations show that as the blend fraction of rings decreases from a pure ring solution, the conformational fluctuations of the ring polymer portion of the blend increase. These results are consistent with the single molecule experiments detailed in Part II to this work [47], which show that rings in a semidilute blend with linear polymers exhibit large extension fluctuations that increase up to , then plateau. Simulations reveal that the origin of these dynamics are a combination of intermolecular topological and hydrodynamic interactions. We show that the application of strong flows can cause strong topological constraints in which a linear chain threads through a ring and deforms it via an intermolecular “hook.” Equilibrium diffusion of rings at the overlap concentration is relatively insensitive to the blend ratio, suggesting that the flow introduces new dynamics [35]. This is supported by the observation that pure linear solutions at form significantly fewer intermolecular hooks than ring-linear blends at . Hooking leads to overshoots in transient fractional extension on the startup of the flow for individual ring trajectories, which is quantified by conformational distributions. However, in simulation, we find that the average number of hooks per chain upon the startup of the flow is low (), and once linear chains stretch fully at , hooking is nearly negligible. Considering that experiments show larger fluctuations, this effect could be sensitive to the molecular weight and details of the flow geometry.
We show that steady state conformational fluctuations in the simulation are driven by intermolecular HI. Three characteristic ring motions are observed: overstretching, retraction, and tank-treading. We measure the effective flow field due to the applied planar extensional flow plus the polymer disturbance velocity to explain these dynamics. We find that fluctuations in the local concentration modify the flow and introduce regions of shear, rotational, and enhanced extensional flows that cause ring deformation. We suggest that the flow modification is stronger for majority linear polymer blends because of the stronger restoring force, causing fluctuations to increase with decreasing blend fraction of rings. We directly test the influence of polymer architecture, size, and shape by comparing the ring-linear systems to bidisperse linear polymer blends in which ring polymers are replaced with linear chains of matched contour length. The dynamics of the short linear chains are in good qualitative and quantitative agreement with the rings, supporting our hypothesis that intermolecular HI causes conformational fluctuations. Thus, our simulations have broader relevance to polymer solution blends and polydisperse solutions in which intermolecular HI could drive unexpected dynamics.
The current work considered only solutions at . The entanglement concentration for -DNA is , and for the simulation model, we estimate 8–10 . Despite this low concentration, we see emergent flow-induced topological constraints that could lead to entanglement dynamics below the equilibrium . A potential area for future study is to quantify the crossover to entangled dynamics in nonequilibrium solutions with nonlinear architectures. More generally, it is of interest to qualitatively characterize nonequilibrium conformations and solution stress in ring-linear blends above , as equilibrium single molecule experiments suggest unique dynamics emerge compared to pure ring or pure linear solutions [34,35].
A more detailed understanding of the influence of intermolecular HI is also essential to elucidate the ring dynamics and bulk flow properties. While equilibrium scaling theories normally neglect intermolecular HI below , there is considerable evidence from bulk rheology [66,91,92], molecular simulations [41,42,93], and theory [94] that as the pervaded volume of the polymer increases with the strain rate, intermolecular interactions become relevant at concentrations significantly below . Furthermore, a detailed study of flow-concentration coupling in connection to molecular dynamics is of interest. Here, we clearly show that spatiotemporal concentration fluctuations modify the effective flow and drive conformational dynamics. Flow modification could also be relevant to kinematically mixed flows [95,96], which should now be accessible by molecular simulation due to recent progress in algorithms for periodic boundary conditions [97,98].
ACKNOWLEDGMENTS
This work was funded by the National Science Foundation (NSF) under Grant No. CBET-1803757 for C.E.S., a DuPont Science & Engineering Fellowship for C.D.Y., the National Science Foundation (NSF) Award (No. CBET-1604038) for C.M.S., and was partially supported by the NSF through the University of Illinois at Urbana-Champaign Materials Research Science and Engineering Center (MRSEC, No. DMR-1720633) for Y.Z. and C.M.S. The authors thank Sarit Dutta for helpful discussions.