Volume limitations and low yield thresholds of biological fluids have led to widespread use of passive microparticle rheology. The mean-squared-displacement (MSD) statistics of bead position time series (bead paths) are either applied directly to determine the creep compliance [Xu et al., Rheol. Acta 37, 387–398 (1998)] or transformed to determine dynamic storage and loss moduli [Mason and Weitz, Phys. Rev. Lett. 74, 1250–1253 (1995)]. A prevalent hurdle arises when there is a nondiffusive experimental drift in the data. Commensurate with the magnitude of drift relative to diffusive mobility, quantified by a Péclet number, the MSD statistics are distorted, and thus the path data must be “corrected” for drift. The standard approach is to estimate and subtract the drift from particle paths, and then calculate MSD statistics. We present an alternative, parametric approach using maximum likelihood estimation that simultaneously fits drift and diffusive model parameters from the path data; the MSD statistics (and consequently the compliance and dynamic moduli) then follow directly from the best-fit model. We illustrate and compare both methods on simulated path data over a range of Péclet numbers, where exact answers are known. We choose fractional Brownian motion as the numerical model, because it affords tunable, subdiffusive MSD statistics consistent with typical 30 s long, experimental observations of microbeads in several biological fluids. Finally, we apply and compare both methods on data from human bronchial epithelial cell culture mucus.
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Research Article|
May 01 2016
Maximum likelihood estimation for single particle, passive microrheology data with drift
John W. R. Mellnik;
John W. R. Mellnik
Curriculum in Bioinformatics and Computational Biology, Department of Mathematics, Department of Biomedical Engineering,
University of North Carolina at Chapel Hill
, Chapel Hill, North Carolina 27599 and Path BioAnalytics, Inc.
, Chapel Hill, North Carolina 27510
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Martin Lysy;
Martin Lysy
Department of Statistics and Actuarial Science,
University of Waterloo
, Waterloo, Ontario N2L 3G1, Canada
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Paula A. Vasquez;
Paula A. Vasquez
Department of Mathematics,
University of South Carolina
, Columbia, South Carolina 29208
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Natesh S. Pillai;
Natesh S. Pillai
Department of Statistics,
Harvard University
, Cambridge, Massachusetts 02138
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David B. Hill;
David B. Hill
The Marsico Lung Institute, Department of Physics and Astronomy,
University of North Carolina at Chapel Hill
, Chapel Hill, North Carolina 27599
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Jeremy Cribb;
Jeremy Cribb
Department of Physics and Astronomy,
University of North Carolina at Chapel Hill
, Chapel Hill, North Carolina 27599
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Scott A. McKinley;
Scott A. McKinley
Department of Mathematics,
Tulane University
, New Orleans, Louisiana 70118
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M. Gregory Forest
M. Gregory Forest
a)
Department of Mathematics, Department of Biomedical Engineering,
University of North Carolina at Chapel Hill
, Chapel Hill, North Carolina 27599
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a)
Author to whom correspondence should be addressed; electronic mail: forest@unc.edu
J. Rheol. 60, 379–392 (2016)
Article history
Received:
September 10 2015
Accepted:
February 26 2016
Citation
John W. R. Mellnik, Martin Lysy, Paula A. Vasquez, Natesh S. Pillai, David B. Hill, Jeremy Cribb, Scott A. McKinley, M. Gregory Forest; Maximum likelihood estimation for single particle, passive microrheology data with drift. J. Rheol. 1 May 2016; 60 (3): 379–392. https://doi.org/10.1122/1.4943988
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