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Journal Articles

Deciphering single-cell 3D chromatin structure using scCTG

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Ran Jiang, Yue Xue, Yanyi Huang, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 245101 (2024)
https://doi.org/10.1063/5.0241334
Published: December 2024
View articletitled, Deciphering single-cell 3D chromatin structure using scCTG
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Journal Articles

Numerical modeling of transient nonlinear water waves generated by horizontally moving bottom disturbances

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Xin Jin, Yi-yi Qin, Yuan Tao, Peng-zhi Lin
Journal: Physics of Fluids
Physics of Fluids 36, 113125 (2024)
https://doi.org/10.1063/5.0234855
Published: November 2024
View articletitled, Numerical modeling of transient nonlinear water waves generated by horizontally moving bottom disturbances
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Journal Articles

Slosh transient variations in rectangular tanks under oblique translational excitations

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Xin Jin, Hua-long Huang, Yi-yi Qin, Hao Yang, Fu-gui Zhang
Journal: Physics of Fluids
Physics of Fluids 36, 104102 (2024)
https://doi.org/10.1063/5.0223430
Published: October 2024
View articletitled, Slosh transient variations in rectangular tanks under oblique translational excitations
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Journal Articles

Traditional and machine learning approaches in structure-based drug virtual screening

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Hong Zhang, Yi Qin Gao
Journal: Chinese Journal of Chemical Physics
Chin. J. Chem. Phys. 37, 177–191 (2024)
https://doi.org/10.1063/1674-0068/cjcp2312128
Published: April 2024
View articletitled, Traditional and machine learning approaches in structure-based drug virtual screening
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Journal Articles

Structural and dynamical aspect of DNA motif sequence specific binding of AP-1 transcription factor

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Piya Patra, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 115103 (2024)
https://doi.org/10.1063/5.0196508
Published: March 2024
View articletitled, Structural and dynamical aspect of DNA motif sequence specific binding of AP-1 transcription factor
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Includes: Supplementary data
Journal Articles

The effect of surface-step-terrace on energy storage density and working temperature of BaZr0.2Ti0.8O3 epitaxial films

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Yi-qin Lu, Tian-Yi Hu, Zixiong Sun, Yunbo Zhang, Yupeng Liu, Yanzhu Dai, Guangliang Hu, Ming Liu, Chunrui Ma, Chun-lin Jia
Journal: Applied Physics Letters
Appl. Phys. Lett. 124, 112905 (2024)
https://doi.org/10.1063/5.0191474
Published: March 2024
View articletitled, The effect of surface-step-terrace on energy storage density and working temperature of BaZr0.2Ti0.8O3 epitaxial films
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Includes: Supplementary data
Journal Articles

Steric repulsion introduced by loop constraints modulates the microphase separation of chromatins

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Jiachen Wei, Yue Xue, Yawei Liu, Hao Tian, Yingfeng Shao, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 054904 (2024)
https://doi.org/10.1063/5.0189692
Published: February 2024
View articletitled, Steric repulsion introduced by loop constraints modulates the microphase separation of chromatins
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Includes: Supplementary data
Journal Articles

A brief review of integrated tempering sampling molecular simulation

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Xu Han, Yao-Kun Lei, Maodong Li, Yi Qin Gao
Journal: Chemical Physics Reviews
Chem. Phys. Rev. 5, 011308 (2024)
https://doi.org/10.1063/5.0175983
Published: February 2024
View articletitled, A brief review of integrated tempering sampling molecular simulation
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Journal Articles

Reaction coordinates by nonlinear dimensionality reduction

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Zhen Zhang, Yao Kun Lei, Jun Zhang, Yi Qin Gao
Journal: Chinese Journal of Chemical Physics
Chin. J. Chem. Phys. 35, 927–934 (2022)
https://doi.org/10.1063/1674-0068/cjcp2104056
Published: December 2022
View articletitled, Reaction coordinates by nonlinear dimensionality reduction
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Includes: Supplementary data
Journal Articles

Deep learning for variational multiscale molecular modeling

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Jun Zhang, Yao-Kun Lei, Yi Isaac Yang, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 174115 (2020)
https://doi.org/10.1063/5.0026836
Published: November 2020
View articletitled, Deep learning for variational multiscale molecular modeling
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Includes: Supplementary data
Journal Articles

Hydration processes of barium chloride: Size-selected anion photoelectron spectroscopy and theoretical calculations of BaCl2-water clusters

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Zhi-You Wei, Li-Jiang Yang, Hong-Guang Xu, Umar Farooq, Xi-Ling Xu, Yi-Qin Gao, Wei-Jun Zheng
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 134301 (2020)
https://doi.org/10.1063/5.0021991
Published: October 2020
View articletitled, Hydration processes of barium chloride: Size-selected anion photoelectron spectroscopy and theoretical calculations of BaCl2-water clusters
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Includes: Supplementary data
Journal Articles

Investigation on the main characteristics of dynamic hohlraum formation at the Julong-1 facility

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Fan Ye, Delong Xiao, Yi Qin, Zhanchang Huang, Ning Ding, Jun Yang, Jian Lu, Jiamin Ning, Shijian Meng, Xiaosong Yan, Shuqing Jiang, Ruihua Yang, Xia Wen, Jianlun Yang, Zeping Xu, Rongkun Xu, Zhenghong Li
Journal: Physics of Plasmas
Phys. Plasmas 27, 093301 (2020)
https://doi.org/10.1063/5.0007416
Published: September 2020
View articletitled, Investigation on the main characteristics of dynamic hohlraum formation at the Julong-1 facility
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Journal Articles

Enhanced sampling in molecular dynamics

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Yi Isaac Yang, Qiang Shao, Jun Zhang, Lijiang Yang, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 070902 (2019)
https://doi.org/10.1063/1.5109531
Published: August 2019
View articletitled, Enhanced sampling in molecular dynamics
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Journal Articles

Experimental investigation of Z-pinch radiation source for indirect drive inertial confinement fusion

Editor’s PickOpen Access
Zhenghong Li, Zhen Wang, Rongkun Xu, Jianlun Yang, Fan Ye, Yanyun Chu, Zeping Xu, Faxin Chen, Shijian Meng, Jianmin Qi, Qinyuan Hu, Yi Qin, Jiaming Ning, Zhanchang Huang, Linbo Li, Shuqing Jiang
Journal: Matter and Radiation at Extremes
Matter Radiat. Extremes 4, 046201 (2019)
https://doi.org/10.1063/1.5099088
Published: July 2019
View articletitled, Experimental investigation of Z-pinch radiation source for indirect drive inertial confinement fusion
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Journal Articles

Structure of water confined between two parallel graphene plates

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Xiaoxia Cai, Wen Jun Xie, Ying Yang, Zhuoran Long, Jun Zhang, Zhuoran Qiao, Lijiang Yang, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 124703 (2019)
https://doi.org/10.1063/1.5080788
Published: March 2019
View articletitled, Structure of water confined between two parallel graphene plates
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Includes: Supplementary data
Journal Articles

Applications of thin film plastic scintillator in measurement of soft x rays generated from Z-pinch implosion

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Qingyuan Hu, Jiamin Ning, Fan Ye, Shijian Meng, Yi Qin, Zeping Xu, Jianlun Yang, Yuecheng Fu, Rongkun Xu, Zhanchang Huang, Faxin Chen, Dong Wang, Lizong Wang
Journal: Review of Scientific Instruments
Rev. Sci. Instrum. 89, 103112 (2018)
https://doi.org/10.1063/1.5049449
Published: October 2018
View articletitled, Applications of thin film plastic scintillator in measurement of soft x rays generated from Z-pinch implosion
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Journal Articles

Molecular dynamics simulation, ab initio calculation, and size-selected anion photoelectron spectroscopy study of initial hydration processes of calcium chloride

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Zhili He, Gang Feng, Bin Yang, Lijiang Yang, Cheng-Wen Liu, Hong-Guang Xu, Xi-Ling Xu, Wei-Jun Zheng, Yi Qin Gao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 222839 (2018)
https://doi.org/10.1063/1.5024279
Published: May 2018
View articletitled, Molecular dynamics simulation, ab initio calculation, and size-selected anion photoelectron spectroscopy study of initial hydration processes of calcium chloride
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Journal Articles

Preliminary investigation on the radiation transfer in dynamic hohlraums on the PTS facility

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Delong Xiao, Fan Ye, Shijian Meng, Jiamin Ning, Yi Qin, Qingyuan Hu, Zhanchang Huang, Jianlun Yang, Faxin Chen, Shuqing Jiang, Ning Ding, Rongkun Xu, Chuang Xue, Yang Zhang, Shunkai Sun, Xiaojian Shu
Journal: Physics of Plasmas
Phys. Plasmas 24, 092701 (2017)
https://doi.org/10.1063/1.4994331
Published: August 2017
View articletitled, Preliminary investigation on the radiation transfer in dynamic hohlraums on the PTS facility
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Journal Articles

Measurement of axial radiation properties in Z-pinch dynamic hohlraum at Julong-1

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Shijian Meng, Qingyuan Hu, Jiaming Ning, Fan Ye, Zhanchang Huang, Yi Qin, Dong Wang, Zeping Xu, Rongkun Xu
Journal: Physics of Plasmas
Phys. Plasmas 24, 014505 (2017)
https://doi.org/10.1063/1.4974771
Published: January 2017
View articletitled, Measurement of axial radiation properties in Z-pinch dynamic hohlraum at Julong-1
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Journal Articles

Hydration of potassium iodide dimer studied by photoelectron spectroscopy and ab initio calculations

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Ren-Zhong Li, Zhen Zeng, Gao-Lei Hou, Hong-Guang Xu, Xiang Zhao, Yi Qin Gao, Wei-Jun Zheng
Journal: The Journal of Chemical Physics
J. Chem. Phys. 145, 184307 (2016)
https://doi.org/10.1063/1.4967168
Published: November 2016
View articletitled, Hydration of potassium iodide dimer studied by photoelectron spectroscopy and ab initio calculations
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Includes: Supplementary data