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Shinji Saito
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Journal Articles

Erratum: “Unraveling the dynamic slowdown in supercooled water: The role of dynamic disorder in jump motions” [J. Chem. Phys. 160, 194506 (2024)]

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Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 029901 (2024)
https://doi.org/10.1063/5.0223851
Published: July 2024
View articletitled, Erratum: “Unraveling the dynamic slowdown in supercooled water: The role of dynamic disorder in jump motions” [J. Chem. Phys. 160, 194506 (2024)]
Open the PDF for Erratum: “Unraveling the dynamic slowdown in supercooled water: The role of dynamic disorder in jump motions” [J. Chem. Phys. 160, 194506 (2024)] in another window
Journal Articles

Unraveling the dynamic slowdown in supercooled water: The role of dynamic disorder in jump motions

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Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 194506 (2024)
https://doi.org/10.1063/5.0209713
Published: May 2024
View articletitled, Unraveling the dynamic slowdown in supercooled water: The role of dynamic disorder in jump motions
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Journal Articles

Excited states of chlorophyll a and b in solution by time-dependent density functional theory

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Zhe Zhu, Masahiro Higashi, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 124111 (2022)
https://doi.org/10.1063/5.0083395
Published: March 2022
View articletitled, Excited states of chlorophyll a and b in solution by time-dependent density functional theory
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Includes: Supplementary data
Journal Articles

Hybrid Monte Carlo method with potential scaling for sampling from the canonical multimodal distribution and imitating the relaxation process

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Taichi Inagaki, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 104111 (2022)
https://doi.org/10.1063/5.0082378
Published: March 2022
View articletitled, Hybrid Monte Carlo method with potential scaling for sampling from the canonical multimodal distribution and imitating the relaxation process
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Includes: Supplementary data
Journal Articles

Microscopic insights into dynamic disorder in the isomerization dynamics of the protein BPTI

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Yoshihiro Matsumura, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 224113 (2021)
https://doi.org/10.1063/5.0055152
Published: June 2021
View articletitled, Microscopic insights into dynamic disorder in the isomerization dynamics of the protein BPTI
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Includes: Supplementary data
Journal Articles

Effects of interfaces on structure and dynamics of water droplets on a graphene surface: A molecular dynamics study

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Manish Maurya, Atanu K. Metya, Jayant K. Singh, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 164704 (2021)
https://doi.org/10.1063/5.0046817
Published: April 2021
View articletitled, Effects of interfaces on structure and dynamics of water droplets on a graphene surface: A molecular dynamics study
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Includes: Supplementary data
Journal Articles

Theory of coherent two-dimensional vibrational spectroscopy

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Thomas la Cour Jansen, Shinji Saito, Jonggu Jeon, Minhaeng Cho
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 100901 (2019)
https://doi.org/10.1063/1.5083966
Published: March 2019
View articletitled, Theory of coherent two-dimensional vibrational spectroscopy
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Journal Articles

Thermodynamic picture of vitrification of water through complex specific heat and entropy: A journey through “no man’s land”

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Shinji Saito, Biman Bagchi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 054502 (2019)
https://doi.org/10.1063/1.5079594
Published: February 2019
View articletitled, Thermodynamic picture of vitrification of water through complex specific heat and entropy: A journey through “no man’s land”
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Journal Articles

Crucial role of fragmented and isolated defects in persistent relaxation of deeply supercooled water

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Shinji Saito, Biman Bagchi, Iwao Ohmine
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 124504 (2018)
https://doi.org/10.1063/1.5044458
Published: September 2018
View articletitled, Crucial role of fragmented and isolated defects in persistent relaxation of deeply supercooled water
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Includes: Supplementary data
Journal Articles

Decay of nonlinear whistler mode waves: 1D versus 2D

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Takayuki Umeda, Shinji Saito, Yasuhiro Nariyuki
Journal: Physics of Plasmas
Phys. Plasmas 25, 072118 (2018)
https://doi.org/10.1063/1.5031483
Published: July 2018
View articletitled, Decay of nonlinear whistler mode waves: 1D versus 2D
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Journal Articles

Rapid decay of nonlinear whistler waves in two dimensions: Full particle simulation

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Takayuki Umeda, Shinji Saito, Yasuhiro Nariyuki
Journal: Physics of Plasmas
Phys. Plasmas 24, 054503 (2017)
https://doi.org/10.1063/1.4982609
Published: April 2017
View articletitled, Rapid decay of nonlinear whistler waves in two dimensions: Full particle simulation
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Journal Articles

Nonlinear damping of a finite amplitude whistler wave due to modified two stream instability

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Shinji Saito, Yasuhiro Nariyuki, Takayuki Umeda
Journal: Physics of Plasmas
Phys. Plasmas 22, 072105 (2015)
https://doi.org/10.1063/1.4926523
Published: July 2015
View articletitled, Nonlinear damping of a finite amplitude whistler wave due to modified two stream instability
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Journal Articles

Dynamic heterogeneity in the folding/unfolding transitions of FiP35

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Toshifumi Mori, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 135101 (2015)
https://doi.org/10.1063/1.4916641
Published: April 2015
View articletitled, Dynamic heterogeneity in the folding/unfolding transitions of FiP35
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Journal Articles

Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase

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Junichi Ono, Shoji Takada, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 212404 (2015)
https://doi.org/10.1063/1.4914328
Published: March 2015
View articletitled, Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase
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Includes: Supplementary data
Journal Articles

Mechanism of ion permeation through a model channel: Roles of energetic and entropic contributions

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Takashi Sumikama, Shinji Saito, Iwao Ohmine
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 165106 (2013)
https://doi.org/10.1063/1.4827088
Published: October 2013
View articletitled, Mechanism of ion permeation through a model channel: Roles of energetic and entropic contributions
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Includes: Supplementary data
Journal Articles

Ultrafast dynamics of liquid water: Frequency fluctuations of the OH stretch and the HOH bend

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Sho Imoto, Sotiris S. Xantheas, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 044503 (2013)
https://doi.org/10.1063/1.4813071
Published: July 2013
View articletitled, Ultrafast dynamics of liquid water: Frequency fluctuations of the OH stretch and the HOH bend
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Journal Articles

Frequency dependence of specific heat in supercooled liquid water and emergence of correlated dynamics

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Shinji Saito, Iwao Ohmine, Biman Bagchi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 094503 (2013)
https://doi.org/10.1063/1.4793555
Published: March 2013
View articletitled, Frequency dependence of specific heat in supercooled liquid water and emergence of correlated dynamics
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Includes: Supplementary data
Journal Articles

Molecular origin of the difference in the HOH bend of the IR spectra between liquid water and ice

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Sho Imoto, Sotiris S. Xantheas, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 054506 (2013)
https://doi.org/10.1063/1.4789951
Published: February 2013
View articletitled, Molecular origin of the difference in the HOH bend of the IR spectra between liquid water and ice
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Journal Articles

Multiple length and time scales of dynamic heterogeneities in model glass-forming liquids: A systematic analysis of multi-point and multi-time correlations

Open Access
Kang Kim, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 12A506 (2013)
https://doi.org/10.1063/1.4769256
Published: January 2013
View articletitled, Multiple length and time scales of dynamic heterogeneities in model glass-forming liquids: A systematic analysis of multi-point and multi-time correlations
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Includes: Supplementary data
Journal Articles

Energy relaxation of intermolecular motions in supercooled water and ice: A molecular dynamics study

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Takuma Yagasaki, Shinji Saito
Journal: The Journal of Chemical Physics
J. Chem. Phys. 135, 244511 (2011)
https://doi.org/10.1063/1.3671993
Published: December 2011
View articletitled, Energy relaxation of intermolecular motions in supercooled water and ice: A molecular dynamics study
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