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Attila Szabo
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Journal Articles

Diffusive barrier crossing rates from variationally determined eigenvalues

Editor’s PickAvailable to Purchase
Alexander M. Berezhkovskii, Irina V. Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 034104 (2021)
https://doi.org/10.1063/5.0058066
Published: July 2021
View articletitled, Diffusive barrier crossing rates from variationally determined eigenvalues
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Journal Articles

Molecular free energy profiles from force spectroscopy experiments by inversion of observed committors

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Roberto Covino, Michael T. Woodside, Gerhard Hummer, Attila Szabo, Pilar Cossio
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 154115 (2019)
https://doi.org/10.1063/1.5118362
Published: October 2019
View articletitled, Molecular free energy profiles from force spectroscopy experiments by inversion of observed committors
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Journal Articles

Publisher’s Note: “Committors, first-passage times, fluxes, Markov states, milestones, and all that” [J. Chem. Phys. 150, 054106 (2019)]

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Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 129901 (2019)
https://doi.org/10.1063/1.5095768
Published: March 2019
View articletitled, Publisher’s Note: “Committors, first-passage times, fluxes, Markov states, milestones, and all that” [J. Chem. Phys. 150, 054106 (2019)]
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Journal Articles

Diffusion-induced competitive two-site binding

Editor’s PickAvailable to Purchase
Irina V. Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 094104 (2019)
https://doi.org/10.1063/1.5079748
Published: March 2019
View articletitled, Diffusion-induced competitive two-site binding
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Journal Articles

Committors, first-passage times, fluxes, Markov states, milestones, and all that

Editor’s PickAvailable to Purchase
Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 054106 (2019)
https://doi.org/10.1063/1.5079742
Published: February 2019
View articletitled, Committors, first-passage times, fluxes, Markov states, milestones, and all that
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Journal Articles

Transition paths in single-molecule force spectroscopy

Open Access
Pilar Cossio, Gerhard Hummer, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123309 (2018)
https://doi.org/10.1063/1.5004767
Published: December 2017
View articletitled, Transition paths in single-molecule force spectroscopy
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Includes: Supplementary data
Journal Articles

Multidimensional reaction rate theory with anisotropic diffusion

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Alexander M. Berezhkovskii, Attila Szabo, Nicholas Greives, Huan-Xiang Zhou
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 204106 (2014)
https://doi.org/10.1063/1.4902243
Published: November 2014
View articletitled, Multidimensional reaction rate theory with anisotropic diffusion
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Journal Articles

Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors

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Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 121910 (2013)
https://doi.org/10.1063/1.4816105
Published: July 2013
View articletitled, Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors
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Journal Articles

Diffusion-influenced ligand binding to buried sites in macromolecules and transmembrane channels

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Alexander M. Berezhkovskii, Attila Szabo, Huan-Xiang Zhou
Journal: The Journal of Chemical Physics
J. Chem. Phys. 135, 075103 (2011)
https://doi.org/10.1063/1.3609973
Published: August 2011
View articletitled, Diffusion-influenced ligand binding to buried sites in macromolecules and transmembrane channels
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Journal Articles

Time scale separation leads to position-dependent diffusion along a slow coordinate

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Alexander Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 135, 074108 (2011)
https://doi.org/10.1063/1.3626215
Published: August 2011
View articletitled, Time scale separation leads to position-dependent diffusion along a slow coordinate
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Journal Articles

Protein dynamics from single-molecule fluorescence intensity correlation functions

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Irina V. Gopich, Daniel Nettels, Benjamin Schuler, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 131, 095102 (2009)
https://doi.org/10.1063/1.3212597
Published: September 2009
View articletitled, Protein dynamics from single-molecule fluorescence intensity correlation functions
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Journal Articles

Reactive flux and folding pathways in network models of coarse-grained protein dynamics

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Alexander Berezhkovskii, Gerhard Hummer, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 130, 205102 (2009)
https://doi.org/10.1063/1.3139063
Published: May 2009
View articletitled, Reactive flux and folding pathways in network models of coarse-grained protein dynamics
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Journal Articles

Diffusion model of solute dynamics in a membrane channel: Mapping onto the two-site model and optimizing the flux

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Sergey M. Bezrukov, Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 127, 115101 (2007)
https://doi.org/10.1063/1.2766720
Published: September 2007
View articletitled, Diffusion model of solute dynamics in a membrane channel: Mapping onto the two-site model and optimizing the flux
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Journal Articles

Perturbation theory of Φ -value analysis of two-state protein folding: Relation between p fold and Φ values

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Alexander Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 125, 104902 (2006)
https://doi.org/10.1063/1.2347708
Published: September 2006
View articletitled, Perturbation theory of Φ -value analysis of two-state protein folding: Relation between p fold and Φ values
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Journal Articles

Theory of the statistics of kinetic transitions with application to single-molecule enzyme catalysis

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Irina V. Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 124, 154712 (2006)
https://doi.org/10.1063/1.2180770
Published: April 2006
View articletitled, Theory of the statistics of kinetic transitions with application to single-molecule enzyme catalysis
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Journal Articles

Erratum: “Ensemble of transition states for two-state protein folding from the eigenvectors of rate matrices” [J. Chem. Phys. 121, 9186 (2004)]

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Alexander Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 122, 079902 (2005)
https://doi.org/10.1063/1.1844397
Published: February 2005
View articletitled, Erratum: “Ensemble of transition states for two-state protein folding from the eigenvectors of rate matrices” [J. Chem. Phys. 121, 9186 (2004)]
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Journal Articles

One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions

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Alexander Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 122, 014503 (2005)
https://doi.org/10.1063/1.1818091
Published: December 2004
View articletitled, One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions
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Journal Articles

Theory of photon statistics in single-molecule Förster resonance energy transfer

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Irina Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 122, 014707 (2005)
https://doi.org/10.1063/1.1812746
Published: December 2004
View articletitled, Theory of photon statistics in single-molecule Förster resonance energy transfer
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Journal Articles

Ensemble of transition states for two-state protein folding from the eigenvectors of rate matrices

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Alexander Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 121, 9186–9187 (2004)
https://doi.org/10.1063/1.1802674
Published: November 2004
View articletitled, Ensemble of transition states for two-state protein folding from the eigenvectors of rate matrices
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Journal Articles

Influence of diffusion on the kinetics of excited-state association–dissociation reactions: Comparison of theory and simulation

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Alexander V. Popov, Noam Agmon, Irina V. Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 120, 6111–6116 (2004)
https://doi.org/10.1063/1.1649935
Published: April 2004
View articletitled, Influence of diffusion on the kinetics of excited-state association–dissociation reactions: Comparison of theory and simulation
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