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Alexander M. Berezhkovskii
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Journal Articles

The significance of fuzzy boundaries of the barrier regions in single-molecule measurements of failed barrier crossing attempts

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Alexander M. Berezhkovskii, Dmitrii E. Makarov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 101101 (2024)
https://doi.org/10.1063/5.0227497
Published: September 2024
View articletitled, The significance of fuzzy boundaries of the barrier regions in single-molecule measurements of failed barrier crossing attempts
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Journal Articles

Trapping of particles diffusing in cylindrical cavity of arbitrary length and radius by two small absorbing disks on the cavity side wall: Narrow escape theory and beyond

Open Access
Leonardo Dagdug, Alexander M. Berezhkovskii
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 034107 (2024)
https://doi.org/10.1063/5.0211411
Published: July 2024
View articletitled, Trapping of particles diffusing in cylindrical cavity of arbitrary length and radius by two small absorbing disks on the cavity side wall: Narrow escape theory and beyond
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Journal Articles

Permeability and diffusion resistance of porous membranes: Analytical theory and its numerical test

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Alexei T. Skvortsov, Leonardo Dagdug, Emily F. Hilder, Alexander M. Berezhkovskii, Sergey M. Bezrukov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 054114 (2023)
https://doi.org/10.1063/5.0138036
Published: February 2023
View articletitled, Permeability and diffusion resistance of porous membranes: Analytical theory and its numerical test
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Journal Articles

Intrinsic diffusion resistance of a membrane channel, mean first-passage times between its ends, and equilibrium unidirectional fluxes

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Alexander M. Berezhkovskii, Sergey M. Bezrukov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 071103 (2022)
https://doi.org/10.1063/5.0082482
Published: February 2022
View articletitled, Intrinsic diffusion resistance of a membrane channel, mean first-passage times between its ends, and equilibrium unidirectional fluxes
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Journal Articles

Surface-facilitated trapping by active sites: From catalysts to viruses

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Mikita M. Misiura, Alexander M. Berezhkovskii, Sergey M. Bezrukov, Anatoly B. Kolomeisky
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 184106 (2021)
https://doi.org/10.1063/5.0069917
Published: November 2021
View articletitled, Surface-facilitated trapping by active sites: From catalysts to viruses
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Journal Articles

Diffusive barrier crossing rates from variationally determined eigenvalues

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Alexander M. Berezhkovskii, Irina V. Gopich, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 034104 (2021)
https://doi.org/10.1063/5.0058066
Published: July 2021
View articletitled, Diffusive barrier crossing rates from variationally determined eigenvalues
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Journal Articles

Crowding breaks the forward/backward symmetry of transition times in biased random walks

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Jaeoh Shin, Alexander M. Berezhkovskii, Anatoly B. Kolomeisky
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 204104 (2021)
https://doi.org/10.1063/5.0053634
Published: May 2021
View articletitled, Crowding breaks the forward/backward symmetry of transition times in biased random walks
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Journal Articles

Localized potential well vs binding site: Mapping solute dynamics in a membrane channel onto one-dimensional description

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Alexander M. Berezhkovskii, Sergey M. Bezrukov, Dmitrii E. Makarov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 111101 (2021)
https://doi.org/10.1063/5.0044044
Published: March 2021
View articletitled, Localized potential well vs binding site: Mapping solute dynamics in a membrane channel onto one-dimensional description
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Journal Articles

Detailed balance for diffusion in a potential with trapping and forward–backward symmetry of trapping time distributions

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Alexander M. Berezhkovskii, Dmitrii E. Makarov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 226101 (2020)
https://doi.org/10.1063/1.5142566
Published: June 2020
View articletitled, Detailed balance for diffusion in a potential with trapping and forward–backward symmetry of trapping time distributions
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Journal Articles

Coarse-graining of asymmetric discrete-time random walk on a one-dimensional lattice

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Juris R. Kalnin, Alexander M. Berezhkovskii
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 224110 (2019)
https://doi.org/10.1063/1.5129637
Published: December 2019
View articletitled, Coarse-graining of asymmetric discrete-time random walk on a one-dimensional lattice
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Journal Articles

Biased diffusion in periodic potentials: Three types of force dependence of effective diffusivity and generalized Lifson-Jackson formula

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Alexander M. Berezhkovskii, Leonardo Dagdug
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 131102 (2019)
https://doi.org/10.1063/1.5120279
Published: October 2019
View articletitled, Biased diffusion in periodic potentials: Three types of force dependence of effective diffusivity and generalized Lifson-Jackson formula
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Journal Articles

On the forward/backward symmetry of transition path time distributions in nonequilibrium systems

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Alexander M. Berezhkovskii, Dmitrii E. Makarov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 065102 (2019)
https://doi.org/10.1063/1.5109293
Published: August 2019
View articletitled, On the forward/backward symmetry of transition path time distributions in nonequilibrium systems
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Journal Articles

Two-site versus continuum diffusion model of blocker dynamics in a membrane channel: Comparative analysis of escape kinetics

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Alexander M. Berezhkovskii, Leonardo Dagdug, Sergey M. Bezrukov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 054113 (2019)
https://doi.org/10.1063/1.5110489
Published: August 2019
View articletitled, Two-site versus continuum diffusion model of blocker dynamics in a membrane channel: Comparative analysis of escape kinetics
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Journal Articles

Trapping of diffusing particles by periodic absorbing rings on a cylindrical tube

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Denis S. Grebenkov, Ralf Metzler, Gleb Oshanin, Leonardo Dagdug, Alexander M. Berezhkovskii, Alexei T. Skvortsov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 206101 (2019)
https://doi.org/10.1063/1.5098390
Published: May 2019
View articletitled, Trapping of diffusing particles by periodic absorbing rings on a cylindrical tube
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Journal Articles

Steady-state flux of diffusing particles to a rough boundary formed by absorbing spikes periodically protruding from a reflecting base

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Alexei T. Skvortsov, Alexander M. Berezhkovskii, Leonardo Dagdug
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 194109 (2019)
https://doi.org/10.1063/1.5088725
Published: May 2019
View articletitled, Steady-state flux of diffusing particles to a rough boundary formed by absorbing spikes periodically protruding from a reflecting base
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Journal Articles

Blocker escape kinetics from a membrane channel analyzed by mapping blocker diffusive dynamics onto a two-site model

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Alexander M. Berezhkovskii, Sergey M. Bezrukov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 194103 (2019)
https://doi.org/10.1063/1.5095594
Published: May 2019
View articletitled, Blocker escape kinetics from a membrane channel analyzed by mapping blocker diffusive dynamics onto a two-site model
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Journal Articles

Publisher’s Note: “Committors, first-passage times, fluxes, Markov states, milestones, and all that” [J. Chem. Phys. 150, 054106 (2019)]

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Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 129901 (2019)
https://doi.org/10.1063/1.5095768
Published: March 2019
View articletitled, Publisher’s Note: “Committors, first-passage times, fluxes, Markov states, milestones, and all that” [J. Chem. Phys. 150, 054106 (2019)]
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Journal Articles

Trapping of diffusing particles by small absorbers localized in a spherical region

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Alexander M. Berezhkovskii, Leonardo Dagdug, Sergey M. Bezrukov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 064107 (2019)
https://doi.org/10.1063/1.5083808
Published: February 2019
View articletitled, Trapping of diffusing particles by small absorbers localized in a spherical region
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Journal Articles

Committors, first-passage times, fluxes, Markov states, milestones, and all that

Editor’s PickAvailable to Purchase
Alexander M. Berezhkovskii, Attila Szabo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 054106 (2019)
https://doi.org/10.1063/1.5079742
Published: February 2019
View articletitled, Committors, first-passage times, fluxes, Markov states, milestones, and all that
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Journal Articles

Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base

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Alexei T. Skvortsov, Alexander M. Berezhkovskii, Leonardo Dagdug
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 044106 (2018)
https://doi.org/10.1063/1.5040774
Published: July 2018
View articletitled, Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base
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