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Aleksandar Donev
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Journal Articles

A simulation platform for slender, semiflexible, and inextensible fibers with Brownian hydrodynamics and steric repulsion

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Ondrej Maxian, Aleksandar Donev
Journal: Physics of Fluids
Physics of Fluids 36, 123320 (2024)
https://doi.org/10.1063/5.0243074
Published: December 2024
View articletitled, A simulation platform for slender, semiflexible, and inextensible fibers with Brownian hydrodynamics and steric repulsion
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Journal Articles

Bending fluctuations in semiflexible, inextensible, slender filaments in Stokes flow: Toward a spectral discretization

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Ondrej Maxian, Brennan Sprinkle, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 154114 (2023)
https://doi.org/10.1063/5.0144242
Published: April 2023
View articletitled, Bending fluctuations in semiflexible, inextensible, slender filaments in Stokes flow: Toward a spectral discretization
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Includes: Supplementary data
Journal Articles

Computing hydrodynamic interactions in confined doubly periodic geometries in linear time

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Aref Hashemi, Raúl P. Peláez, Sachin Natesh, Brennan Sprinkle, Ondrej Maxian, Zecheng Gan, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 154101 (2023)
https://doi.org/10.1063/5.0141371
Published: April 2023
View articletitled, Computing hydrodynamic interactions in confined doubly periodic geometries in linear time
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Journal Articles

A fast spectral method for electrostatics in doubly periodic slit channels

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Ondrej Maxian, Raúl P. Peláez, Leslie Greengard, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 204107 (2021)
https://doi.org/10.1063/5.0044677
Published: May 2021
View articletitled, A fast spectral method for electrostatics in doubly periodic slit channels
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Journal Articles

Brownian dynamics of fully confined suspensions of rigid particles without Green’s functions

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Brennan Sprinkle, Aleksandar Donev, Amneet Pal Singh Bhalla, Neelesh Patankar
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 164116 (2019)
https://doi.org/10.1063/1.5090114
Published: April 2019
View articletitled, Brownian dynamics of fully confined suspensions of rigid particles without Green’s functions
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Journal Articles

Fluctuating hydrodynamics of reactive liquid mixtures

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Changho Kim, Andy Nonaka, John B. Bell, Alejandro L. Garcia, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 084113 (2018)
https://doi.org/10.1063/1.5043428
Published: August 2018
View articletitled, Fluctuating hydrodynamics of reactive liquid mixtures
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Journal Articles

Efficient reactive Brownian dynamics

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Aleksandar Donev, Chiao-Yu Yang, Changho Kim
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 034103 (2018)
https://doi.org/10.1063/1.5009464
Published: January 2018
View articletitled, Efficient reactive Brownian dynamics
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Journal Articles

Large scale Brownian dynamics of confined suspensions of rigid particles

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Brennan Sprinkle, Florencio Balboa Usabiaga, Neelesh A. Patankar, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 147, 244103 (2017)
https://doi.org/10.1063/1.5003833
Published: December 2017
View articletitled, Large scale Brownian dynamics of confined suspensions of rigid particles
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Journal Articles

Brownian dynamics of confined suspensions of active microrollers

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Florencio Balboa Usabiaga, Blaise Delmotte, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 134104 (2017)
https://doi.org/10.1063/1.4979494
Published: April 2017
View articletitled, Brownian dynamics of confined suspensions of active microrollers
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Includes: Supplementary data
Journal Articles

Rapid sampling of stochastic displacements in Brownian dynamics simulations

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Andrew M. Fiore, Florencio Balboa Usabiaga, Aleksandar Donev, James W. Swan
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 124116 (2017)
https://doi.org/10.1063/1.4978242
Published: March 2017
View articletitled, Rapid sampling of stochastic displacements in Brownian dynamics simulations
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Includes: Supplementary data
Journal Articles

Stochastic simulation of reaction-diffusion systems: A fluctuating-hydrodynamics approach

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Changho Kim, Andy Nonaka, John B. Bell, Alejandro L. Garcia, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 124110 (2017)
https://doi.org/10.1063/1.4978775
Published: March 2017
View articletitled, Stochastic simulation of reaction-diffusion systems: A fluctuating-hydrodynamics approach
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Journal Articles

Coupling a nano-particle with isothermal fluctuating hydrodynamics: Coarse-graining from microscopic to mesoscopic dynamics

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Pep Español, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 234104 (2015)
https://doi.org/10.1063/1.4936775
Published: December 2015
View articletitled, Coupling a nano-particle with isothermal fluctuating hydrodynamics: Coarse-graining from microscopic to mesoscopic dynamics
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Journal Articles

Brownian dynamics of confined rigid bodies

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Steven Delong, Florencio Balboa Usabiaga, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 144107 (2015)
https://doi.org/10.1063/1.4932062
Published: October 2015
View articletitled, Brownian dynamics of confined rigid bodies
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Journal Articles

Fluctuating hydrodynamics of multi-species reactive mixtures

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Amit Kumar Bhattacharjee, Kaushik Balakrishnan, Alejandro L. Garcia, John B. Bell, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 224107 (2015)
https://doi.org/10.1063/1.4922308
Published: June 2015
View articletitled, Fluctuating hydrodynamics of multi-species reactive mixtures
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Journal Articles

Low Mach number fluctuating hydrodynamics of multispecies liquid mixtures

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Aleksandar Donev, Andy Nonaka, Amit Kumar Bhattacharjee, Alejandro L. Garcia, John B. Bell
Journal: Physics of Fluids
Physics of Fluids 27, 037103 (2015)
https://doi.org/10.1063/1.4913571
Published: March 2015
View articletitled, Low Mach number fluctuating hydrodynamics of multispecies liquid mixtures
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Journal Articles

Finite element discretization of non-linear diffusion equations with thermal fluctuations

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J. A. de la Torre, Pep Español, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 094115 (2015)
https://doi.org/10.1063/1.4913746
Published: March 2015
View articletitled, Finite element discretization of non-linear diffusion equations with thermal fluctuations
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Journal Articles

Dynamic density functional theory with hydrodynamic interactions and fluctuations

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Aleksandar Donev, Eric Vanden-Eijnden
Journal: The Journal of Chemical Physics
J. Chem. Phys. 140, 234115 (2014)
https://doi.org/10.1063/1.4883520
Published: June 2014
View articletitled, Dynamic density functional theory with hydrodynamic interactions and fluctuations
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Journal Articles

Brownian dynamics without Green's functions

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Steven Delong, Florencio Balboa Usabiaga, Rafael Delgado-Buscalioni, Boyce E. Griffith, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 140, 134110 (2014)
https://doi.org/10.1063/1.4869866
Published: April 2014
View articletitled, Brownian dynamics without Green's functions
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Journal Articles

The Stokes-Einstein relation at moderate Schmidt number

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Florencio Balboa Usabiaga, Xiaoyi Xie, Rafael Delgado-Buscalioni, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 214113 (2013)
https://doi.org/10.1063/1.4834696
Published: December 2013
View articletitled, The Stokes-Einstein relation at moderate Schmidt number
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Journal Articles

A minimally-resolved immersed boundary model for reaction-diffusion problems

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Amneet Pal Singh Bhalla, Boyce E. Griffith, Neelesh A. Patankar, Aleksandar Donev
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 214112 (2013)
https://doi.org/10.1063/1.4834638
Published: December 2013
View articletitled, A minimally-resolved immersed boundary model for reaction-diffusion problems
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