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Journal Articles

Conformational dynamics of adenylate kinase in crystals

Junhyung Kim, Sojin Moon, Tod D. Romo, Yifei Yang, Euiyoung Bae, George N. Phillips, Jr.

Struct. Dyn. 11, 014702 (2024)

https://doi.org/10.1063/4.0000205

Published: February 2024

View article titled, Conformational dynamics of adenylate kinase in crystals

Includes: Supplementary data

Journal Articles

High-throughput thermal denaturation of tryptophanyl-tRNA synthetase combinatorial mutants reveals high-order energetic coupling determinants of conformational stability

Violetta Weinreb, Gabriel Weinreb, Charles W. Carter, Jr.

Struct. Dyn. 10, 044304 (2023)

https://doi.org/10.1063/4.0000182

Published: August 2023

View article titled, High-throughput thermal denaturation of tryptophanyl-tRNA synthetase combinatorial mutants reveals high-order energetic coupling determinants of conformational stability

Includes: Supplementary data

Journal Articles

Microcalorimetry reveals multi-state thermal denaturation of G. stearothermophilus tryptophanyl-tRNA synthetase

Srinivas Niranj Chandrasekaran, Jhuma Das, Nikolay V. Dokholyan, Charles W. Carter, Jr.

Struct. Dyn. 10, 044301 (2023)

https://doi.org/10.1063/4.0000181

Published: July 2023

View article titled, Microcalorimetry reveals multi-state thermal denaturation of G. stearothermophilus tryptophanyl-tRNA synthetase

Journal Articles

Molecular storytelling for online structural biology outreach and education

David S. Goodsell, Shuchismita Dutta, Maria Voigt, Christine Zardecki

Struct. Dyn. 8, 020401 (2021)

https://doi.org/10.1063/4.0000077

Published: March 2021

View article titled, Molecular storytelling for online structural biology outreach and education

Journal Articles

Single-particle imaging by x-ray free-electron lasers—How many snapshots are needed?

I. Poudyal, M. Schmidt, P. Schwander

Struct. Dyn. 7, 024102 (2020)

https://doi.org/10.1063/1.5144516

Published: March 2020

View article titled, Single-particle imaging by x-ray free-electron lasers—How many snapshots are needed?

Journal Articles

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin

Ming Dong, Mackenzie L. Lauro, Timothy J. Koblish, Brian J. Bahnson

Struct. Dyn. 7, 014101 (2020)

https://doi.org/10.1063/1.5130582

Published: February 2020

View article titled, Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin

Journal Articles

Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT

Anna S. Gardberg, Annissa J. Huhn, Richard Cummings, Archana Bommi-Reddy, Florence Poy, Jeremy Setser, Valerie Vivat, Francois Brucelle, Jonathan Wilson

Struct. Dyn. 6, 054702 (2019)

https://doi.org/10.1063/1.5119336

Published: October 2019

View article titled, Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT

Journal Articles

Structural and dynamical description of the enzymatic reaction of a phosphohexomutase

Kyle M. Stiers, Abigail C. Graham, Jian-She Zhu, David L. Jakeman, Jay C. Nix, Lesa J. Beamer

Struct. Dyn. 6, 024703 (2019)

https://doi.org/10.1063/1.5092803

Published: April 2019

View article titled, Structural and dynamical description of the enzymatic reaction of a phosphohexomutase

Includes: Supplementary data

Journal Articles

Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability

Sojin Moon, Junhyung Kim, Jasung Koo, Euiyoung Bae

Struct. Dyn. 6, 024702 (2019)

https://doi.org/10.1063/1.5089707

Published: March 2019

View article titled, Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability

Includes: Supplementary data

Journal Articles

A comparison of the innate flexibilities of six chains in F₁-ATPase with identical secondary and tertiary folds; 3 active enzymes and 3 structural proteins

Monique M. Tirion

Struct. Dyn. 4, 044001 (2017)

https://doi.org/10.1063/1.4967226

Published: November 2016

View article titled, A comparison of the innate flexibilities of six chains in F1-ATPase with identical secondary and tertiary folds; 3 active enzymes and 3 structural proteins

Journal Articles

Preface to Special Topic on Protein Dynamics: Beyond Static Snapshots in Structural Biology

George N. Phillips, Jr., José N. Onuchic

Struct. Dyn. 3, 011901 (2016)

https://doi.org/10.1063/1.4942424

Published: February 2016

View article titled, Preface to Special Topic on Protein Dynamics: Beyond Static Snapshots in Structural Biology

Journal Articles

Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis

Lu Han, Shanteri Singh, Jon S. Thorson, George N. Phillips, Jr.

Struct. Dyn. 3, 012004 (2016)

https://doi.org/10.1063/1.4941368

Published: February 2016

View article titled, Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis

Journal Articles

Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse

Struct. Dyn. 2, 041703 (2015)

https://doi.org/10.1063/1.4919398

Published: April 2015

View article titled, Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse

Journal Articles

Perspectives for imaging single protein molecules with the present design of the European XFEL

Kartik Ayyer, Gianluca Geloni, Vitali Kocharyan, Evgeni Saldin, Svitozar Serkez, Oleksandr Yefanov, Igor Zagorodnov

Struct. Dyn. 2, 041702 (2015)

https://doi.org/10.1063/1.4919301

Published: April 2015

View article titled, Perspectives for imaging single protein molecules with the present design of the European XFEL

Journal Articles

Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer

Marius Schmidt, Dilano K. Saldin

Struct. Dyn. 1, 024701 (2014)

https://doi.org/10.1063/1.4869472

Published: March 2014

View article titled, Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer

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Topics

Conformational dynamics of adenylate kinase in crystals

High-throughput thermal denaturation of tryptophanyl-tRNA synthetase combinatorial mutants reveals high-order energetic coupling determinants of conformational stability

Microcalorimetry reveals multi-state thermal denaturation of G. stearothermophilus tryptophanyl-tRNA synthetase

Molecular storytelling for online structural biology outreach and education

Single-particle imaging by x-ray free-electron lasers—How many snapshots are needed?

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin

Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT

Structural and dynamical description of the enzymatic reaction of a phosphohexomutase

Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability

A comparison of the innate flexibilities of six chains in F₁-ATPase with identical secondary and tertiary folds; 3 active enzymes and 3 structural proteins

Preface to Special Topic on Protein Dynamics: Beyond Static Snapshots in Structural Biology

Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis

Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse

Perspectives for imaging single protein molecules with the present design of the European XFEL

Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer

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