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Journal Articles

Stochastic distinguishability of Markovian trajectories

Asawari Pagare, Zhongmin Zhang, Jiming Zheng, Zhiyue Lu
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 171101 (2024)
https://doi.org/10.1063/5.0203335
Published: May 2024
View article titled, Stochastic distinguishability of Markovian trajectories
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Includes: Supplementary data
Journal Articles

Assumption-free analysis for amplification-based quantitative nucleic acid detection

Yu Fu, Lu Lin, Chuanbo Liu, Jin Wang
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 104111 (2024)
https://doi.org/10.1063/5.0191132
Published: March 2024
View article titled, Assumption-free analysis for amplification-based quantitative nucleic acid detection
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Includes: Supplementary data
Journal Articles

Theoretical insight on the charge transport properties: The formation of “head-to-tail” and “head-to-head” stacking of asymmetric aryl anthracene derivatives

Xiao-Qi Sun, Gui-Ya Qin, Hui-Yuan Li, Heng-Yu Jin, Rui Wang, Hui Li, Ai-Min Ren, Jing-Fu Guo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 174301 (2023)
https://doi.org/10.1063/5.0139904
Published: May 2023
View article titled, Theoretical insight on the charge transport properties: The formation of “head-to-tail” and “head-to-head” stacking of asymmetric aryl anthracene derivatives
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Includes: Supplementary data
Journal Articles

Atomically precise binding conformations of adenine and its variants on gold using single molecule conductance signatures

Featured
Xiaoyun Pan, Cheng Qian, Amber Chow, Lu Wang, Maria Kamenetska
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 234201 (2022)
https://doi.org/10.1063/5.0103642
Published: December 2022
View article titled, Atomically precise binding conformations of adenine and its variants on gold using single molecule conductance signatures
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Includes: Supplementary data
Journal Articles

Understanding the bonding mechanisms of organic molecules deposited on graphene for biosensing applications

Elizabeth J. Legge, Muhammad M. Ali, Hina Y. Abbasi, Benjamen P. Reed, Barry Brennan, Lidija Matjačić, Zari Tehrani, Vlad Stolojan, S. Ravi P. Silva, Owen J. Guy, Andrew J. Pollard
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 174703 (2021)
https://doi.org/10.1063/5.0064136
Published: November 2021
View article titled, Understanding the bonding mechanisms of organic molecules deposited on graphene for biosensing applications
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Includes: Supplementary data
Journal Articles

Theoretical investigation of size, shape, and aspect ratio effect on the LSPR sensitivity of hollow-gold nanoshells

Masoud Shabaninezhad, Guda Ramakrishna
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 144116 (2019)
https://doi.org/10.1063/1.5090885
Published: April 2019
View article titled, Theoretical investigation of size, shape, and aspect ratio effect on the LSPR sensitivity of hollow-gold nanoshells
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Includes: Supplementary data
Journal Articles

Brownian dynamics of a neutral protein moving through a nanopore in an electrically biased membrane

Editor’s Pick
Craig C. Wells, Dmitriy V. Melnikov, Maria E. Gracheva
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 115103 (2019)
https://doi.org/10.1063/1.5080944
Published: March 2019
View article titled, Brownian dynamics of a neutral protein moving through a nanopore in an electrically biased membrane
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Journal Articles

Dielectric boundary effects on the interaction between planar charged surfaces with counterions only

Alexandre P. dos Santos, Roland R. Netz
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 164103 (2018)
https://doi.org/10.1063/1.5022226
Published: April 2018
View article titled, Dielectric boundary effects on the interaction between planar charged surfaces with counterions only
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Journal Articles

Modeling antigen-antibody nanoparticle bioconjugates and their polymorphs

Caroline Desgranges, Jerome Delhommelle
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 124507 (2018)
https://doi.org/10.1063/1.5018855
Published: March 2018
View article titled, Modeling antigen-antibody nanoparticle bioconjugates and their polymorphs
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Journal Articles

Controlling resonance energy transfer in nanostructure emitters by positioning near a mirror

Dilusha Weeraddana, Malin Premaratne, Sarath D. Gunapala, David L. Andrews
Journal: The Journal of Chemical Physics
J. Chem. Phys. 147, 074117 (2017)
https://doi.org/10.1063/1.4998459
Published: August 2017
View article titled, Controlling resonance energy transfer in nanostructure emitters by positioning near a mirror
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Journal Articles

Target search kinetics of self-propelled particles in a confining domain

Jiajun Wang, Yuhao Chen, Wancheng Yu, Kaifu Luo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 144, 204702 (2016)
https://doi.org/10.1063/1.4952423
Published: May 2016
View article titled, Target search kinetics of self-propelled particles in a confining domain
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Journal Articles

Electronic coupling through natural amino acids

Laura Berstis, Gregg T. Beckham, Michael F. Crowley
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 225102 (2015)
https://doi.org/10.1063/1.4936588
Published: December 2015
View article titled, Electronic coupling through natural amino acids
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Includes: Supplementary data
Journal Articles

Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design

Christopher D. Cooper, Natalia C. Clementi, Lorena A. Barba
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 124709 (2015)
https://doi.org/10.1063/1.4931113
Published: September 2015
View article titled, Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design
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Includes: Supplementary data
Journal Articles

Communication: Antibody stability and behavior on surfaces

Derek B. Bush, Thomas A. Knotts, IV
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 061101 (2015)
https://doi.org/10.1063/1.4928455
Published: August 2015
View article titled, Communication: Antibody stability and behavior on surfaces
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Includes: Supplementary data
Journal Articles

Computation of the binding free energy of peptides to graphene in explicit water

Corrinne M. Welch, Aerial N. Camden, Stephen A. Barr, Gary M. Leuty, Gary S. Kedziora, Rajiv J. Berry
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 045104 (2015)
https://doi.org/10.1063/1.4927344
Published: July 2015
View article titled, Computation of the binding free energy of peptides to graphene in explicit water
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Includes: Supplementary data
Journal Articles

Heterogeneous patterns on block copolymer thin film via solvent annealing: Effect on protein adsorption

Lei Shen, Jintao Zhu, Haojun Liang
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 101908 (2015)
https://doi.org/10.1063/1.4906345
Published: January 2015
View article titled, Heterogeneous patterns on block copolymer thin film via solvent annealing: Effect on protein adsorption
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Journal Articles

Quantitative chemical exchange saturation transfer with hyperpolarized nuclei (qHyper-CEST): Sensing xenon-host exchange dynamics and binding affinities by NMR

M. Kunth, C. Witte, L. Schröder
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 194202 (2014)
https://doi.org/10.1063/1.4901429
Published: November 2014
View article titled, Quantitative chemical exchange saturation transfer with hyperpolarized nuclei (qHyper-CEST): Sensing xenon-host exchange dynamics and binding affinities by NMR
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Includes: Supplementary data
Journal Articles

Detachment energies of spheroidal particles from fluid-fluid interfaces

Gary B. Davies, Timm Krüger, Peter V. Coveney, Jens Harting
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 154902 (2014)
https://doi.org/10.1063/1.4898071
Published: October 2014
View article titled, Detachment energies of spheroidal particles from fluid-fluid interfaces
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Journal Articles

How water layers on graphene affect folding and adsorption of TrpZip2

Emanuel K. Peter, Mrigya Agarwal, BongKeun Kim, Igor V. Pivkin, Joan-Emma Shea
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 22D511 (2014)
https://doi.org/10.1063/1.4896984
Published: October 2014
View article titled, How water layers on graphene affect folding and adsorption of TrpZip2
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Includes: Supplementary data
Journal Articles

An atomic charge model for graphene oxide for exploring its bioadhesive properties in explicit water

D. Stauffer, N. Dragneva, W. B. Floriano, R. C. Mawhinney, G. Fanchini, S. French, O. Rubel
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 044705 (2014)
https://doi.org/10.1063/1.4890503
Published: July 2014
View article titled, An atomic charge model for graphene oxide for exploring its bioadhesive properties in explicit water
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Includes: Supplementary data