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Journal Articles

Heat capacity changes associated with G-quadruplex unfolding

Arees Garabet, Lutan Liu, Tigran V. Chalikian
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 055101 (2023)
https://doi.org/10.1063/5.0157749
Published: August 2023
View article titled, Heat capacity changes associated with G-quadruplex unfolding
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Includes: Supplementary data
Journal Articles

Shape-induced crystallization of binary DNA-functionalized nanocubes

Yunhan Zhang, Giuliana Giunta, Haojun Liang, Marjolein Dijkstra
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 184902 (2023)
https://doi.org/10.1063/5.0148139
Published: May 2023
View article titled, Shape-induced crystallization of binary DNA-functionalized nanocubes
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Journal Articles

Ensemble inequivalence and negative extensibility in a strongly stretched wormlike chain with fluctuating bending stiffness

Panayotis Benetatos
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 164112 (2022)
https://doi.org/10.1063/5.0112552
Published: October 2022
View article titled, Ensemble inequivalence and negative extensibility in a strongly stretched wormlike chain with fluctuating bending stiffness
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Journal Articles

Diffusion mechanisms of DNA in agarose gels: NMR studies and Monte Carlo simulations

Ida Bochert, Jan-Philipp Günther, Peer Fischer, Günter Majer
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 245103 (2022)
https://doi.org/10.1063/5.0092568
Published: June 2022
View article titled, Diffusion mechanisms of DNA in agarose gels: NMR studies and Monte Carlo simulations
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Includes: Supplementary data
Journal Articles

Can one detect intermediate denaturation states of DNA sequences by following the equilibrium open–close dynamic fluctuations of a single base pair?

Keerti Chauhan, Amit Raj Singh, Sanjay Kumar, Rony Granek
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 164907 (2022)
https://doi.org/10.1063/5.0088109
Published: April 2022
View article titled, Can one detect intermediate denaturation states of DNA sequences by following the equilibrium open–close dynamic fluctuations of a single base pair?
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Includes: Supplementary data
Journal Articles

A single nucleobase tunes nonradiative decay in a DNA-bound silver cluster

Yuyuan Zhang, Chen He, Kimberly de La Harpe, Peter M. Goodwin, Jeffrey T. Petty, Bern Kohler
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 094305 (2021)
https://doi.org/10.1063/5.0056836
Published: September 2021
View article titled, A single nucleobase tunes nonradiative decay in a DNA-bound silver cluster
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Includes: Supplementary data
Journal Articles

Efimov-DNA phase diagram: Three stranded DNA on a cubic lattice

Somendra M. Bhattacharjee, Damien Paul Foster
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 064903 (2021)
https://doi.org/10.1063/5.0059153
Published: August 2021
View article titled, Efimov-DNA phase diagram: Three stranded DNA on a cubic lattice
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Journal Articles

Electron ratcheting in self-assembled soft matter

Jesús Valdiviezo, Peng Zhang, David N. Beratan
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 055102 (2021)
https://doi.org/10.1063/5.0044420
Published: August 2021
View article titled, Electron ratcheting in self-assembled soft matter
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Journal Articles

Long-lived Ag106+ luminescence and a split DNA scaffold

Jeffrey T. Petty, Savannah Carnahan, Dahye Kim, David Lewis
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 244302 (2021)
https://doi.org/10.1063/5.0056214
Published: June 2021
View article titled, Long-lived Ag<sub>10</sub><sup>6+</sup> luminescence and a split DNA scaffold
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Includes: Supplementary data
Journal Articles

Assessing the sequence dependence of pyrimidine–pyrimidone (6–4) photoproduct in a duplex double-stranded DNA: A pitfall for microsecond range simulation

Natacha Gillet, Alessio Bartocci, Elise Dumont
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 135103 (2021)
https://doi.org/10.1063/5.0041332
Published: April 2021
View article titled, Assessing the sequence dependence of pyrimidine–pyrimidone (6–4) photoproduct in a duplex double-stranded DNA: A pitfall for microsecond range simulation
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Includes: Supplementary data
Journal Articles

Ultrafast excited state dynamics of silver ion-mediated cytosine–cytosine base pairs in metallo-DNA

Forrest R. Kohl, Yuyuan Zhang, Aaron P. Charnay, Lara Martínez-Fernández, Bern Kohler
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 105104 (2020)
https://doi.org/10.1063/5.0020463
Published: September 2020
View article titled, Ultrafast excited state dynamics of silver ion-mediated cytosine–cytosine base pairs in metallo-DNA
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Includes: Supplementary data
Journal Articles

Understanding enhanced mechanical stability of DNA in the presence of intercalated anticancer drug: Implications for DNA associated processes

Anil Kumar Sahoo, Biman Bagchi, Prabal K. Maiti
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 164902 (2019)
https://doi.org/10.1063/1.5117163
Published: October 2019
View article titled, Understanding enhanced mechanical stability of DNA in the presence of intercalated anticancer drug: Implications for DNA associated processes
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Includes: Supplementary data
Journal Articles

Note: Absolute electronic excitation cross sections for 8.5-17.5 eV electron scattering from condensed dimethyl phosphate (DMP)

V. Lemelin, A. D. Bass, L. Sanche
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 246101 (2018)
https://doi.org/10.1063/1.5059387
Published: December 2018
View article titled, Note: Absolute electronic excitation cross sections for 8.5-17.5 eV electron scattering from condensed dimethyl phosphate (DMP)
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Journal Articles

Promoting single-file DNA translocations through nanopores using electro-osmotic flow

Niklas Ermann, Nikita Hanikel, Vivian Wang, Kaikai Chen, Nicole E. Weckman, Ulrich F. Keyser
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 163311 (2018)
https://doi.org/10.1063/1.5031010
Published: July 2018
View article titled, Promoting single-file DNA translocations through nanopores using electro-osmotic flow
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Includes: Supplementary data
Journal Articles

Temperature-dependent conformations of exciton-coupled Cy3 dimers in double-stranded DNA

Loni Kringle, Nicolas P. D. Sawaya, Julia Widom, Carson Adams, Michael G. Raymer, Alán Aspuru-Guzik, Andrew H. Marcus
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 085101 (2018)
https://doi.org/10.1063/1.5020084
Published: February 2018
View article titled, Temperature-dependent conformations of exciton-coupled Cy3 dimers in double-stranded DNA
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Includes: Supplementary data
Journal Articles

Force-extension behavior of DNA in the presence of DNA-bending nucleoid associated proteins

K. Dahlke, C. E. Sing
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 084902 (2018)
https://doi.org/10.1063/1.5016177
Published: February 2018
View article titled, Force-extension behavior of DNA in the presence of DNA-bending nucleoid associated proteins
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Journal Articles

Optimizing the formation of colloidal compounds with components of different shapes

Fernando A. Escobedo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 147, 214501 (2017)
https://doi.org/10.1063/1.5006047
Published: December 2017
View article titled, Optimizing the formation of colloidal compounds with components of different shapes
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Journal Articles

Effect of the reflectional symmetry on the coherent hole transport across DNA hairpins

Mehdi Zarea, Yuri Berlin, Mark A. Ratner
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 114105 (2017)
https://doi.org/10.1063/1.4978571
Published: March 2017
View article titled, Effect of the reflectional symmetry on the coherent hole transport across DNA hairpins
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Journal Articles

Signal replication in a DNA nanostructure

Oscar Mendoza, Said Houmadi, Jean-Pierre Aimé, Juan Elezgaray
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 025102 (2017)
https://doi.org/10.1063/1.4973314
Published: January 2017
View article titled, Signal replication in a DNA nanostructure
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Journal Articles

Absolute cross sections for electronic excitation of condensed tetrahydrofuran (THF) by 11-16 eV electrons

V. Lemelin, A. D. Bass, P. Cloutier, L. Sanche
Journal: The Journal of Chemical Physics
J. Chem. Phys. 145, 174703 (2016)
https://doi.org/10.1063/1.4966650
Published: November 2016
View article titled, Absolute cross sections for electronic excitation of condensed tetrahydrofuran (THF) by 11-16 eV electrons
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