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Journal Articles

A phase-field model for solutions of DNA-made particles

Marco Cappa, Francesco Sciortino, Lorenzo Rovigatti

J. Chem. Phys. 162, 194901 (2025)

https://doi.org/10.1063/5.0257265

Published: May 2025

View articletitled, A phase-field model for solutions of DNA-made particles

Journal Articles

The conundrum of diffuse basis sets: A blessing for accuracy yet a curse for sparsity

Henryk Laqua, Linus Bjarne Dittmer, Martin Head-Gordon

J. Chem. Phys. 162, 184107 (2025)

https://doi.org/10.1063/5.0264572

Published: May 2025

View articletitled, The conundrum of diffuse basis sets: A blessing for accuracy yet a curse for sparsity

Journal Articles

Ultrafast spectroscopy study of DNA photophysics after proflavine intercalation

Jie Zhou, Xueli Wang, Menghui Jia, Xiaoxiao He, Haifeng Pan, Jinquan Chen

J. Chem. Phys. 160, 124305 (2024)

https://doi.org/10.1063/5.0194608

Published: March 2024

View articletitled, Ultrafast spectroscopy study of DNA photophysics after proflavine intercalation

Includes: Supplementary data

Journal Articles

Silver induced chirality controlled spin filtration observed in ss-DNA functionalized with MoS₂

Abhinandan Kumar, Subrata Majumder

J. Chem. Phys. 160, 124702 (2024)

https://doi.org/10.1063/5.0192066

Published: March 2024

View articletitled, Silver induced chirality controlled spin filtration observed in ss-DNA functionalized with MoS2

Journal Articles

Coarse-grained modeling of DNA–RNA hybrids

Eryk J. Ratajczyk, Petr Šulc, Andrew J. Turberfield, Jonathan P. K. Doye, Ard A. Louis

J. Chem. Phys. 160, 115101 (2024)

https://doi.org/10.1063/5.0199558

Published: March 2024

View articletitled, Coarse-grained modeling of DNA–RNA hybrids

Includes: Supplementary data

Journal Articles

Designing 3D multicomponent self-assembling systems with signal-passing building blocks

Joshua Evans, Petr Šulc

J. Chem. Phys. 160, 084902 (2024)

https://doi.org/10.1063/5.0191282

Published: February 2024

View articletitled, Designing 3D multicomponent self-assembling systems with signal-passing building blocks

Includes: Supplementary data

Journal Articles

Heat capacity changes associated with G-quadruplex unfolding

Arees Garabet, Lutan Liu, Tigran V. Chalikian

J. Chem. Phys. 159, 055101 (2023)

https://doi.org/10.1063/5.0157749

Published: August 2023

View articletitled, Heat capacity changes associated with G-quadruplex unfolding

Includes: Supplementary data

Journal Articles

Shape-induced crystallization of binary DNA-functionalized nanocubes

Yunhan Zhang, Giuliana Giunta, Haojun Liang, Marjolein Dijkstra

J. Chem. Phys. 158, 184902 (2023)

https://doi.org/10.1063/5.0148139

Published: May 2023

View articletitled, Shape-induced crystallization of binary DNA-functionalized nanocubes

Journal Articles

Ensemble inequivalence and negative extensibility in a strongly stretched wormlike chain with fluctuating bending stiffness

Panayotis Benetatos

J. Chem. Phys. 157, 164112 (2022)

https://doi.org/10.1063/5.0112552

Published: October 2022

View articletitled, Ensemble inequivalence and negative extensibility in a strongly stretched wormlike chain with fluctuating bending stiffness

Journal Articles

Diffusion mechanisms of DNA in agarose gels: NMR studies and Monte Carlo simulations

Ida Bochert, Jan-Philipp Günther, Peer Fischer, Günter Majer

J. Chem. Phys. 156, 245103 (2022)

https://doi.org/10.1063/5.0092568

Published: June 2022

View articletitled, Diffusion mechanisms of DNA in agarose gels: NMR studies and Monte Carlo simulations

Includes: Supplementary data

Journal Articles

Can one detect intermediate denaturation states of DNA sequences by following the equilibrium open–close dynamic fluctuations of a single base pair?

Keerti Chauhan, Amit Raj Singh, Sanjay Kumar, Rony Granek

J. Chem. Phys. 156, 164907 (2022)

https://doi.org/10.1063/5.0088109

Published: April 2022

View articletitled, Can one detect intermediate denaturation states of DNA sequences by following the equilibrium open–close dynamic fluctuations of a single base pair?

Includes: Supplementary data

Journal Articles

A single nucleobase tunes nonradiative decay in a DNA-bound silver cluster

Yuyuan Zhang, Chen He, Kimberly de La Harpe, Peter M. Goodwin, Jeffrey T. Petty, Bern Kohler

J. Chem. Phys. 155, 094305 (2021)

https://doi.org/10.1063/5.0056836

Published: September 2021

View articletitled, A single nucleobase tunes nonradiative decay in a DNA-bound silver cluster

Includes: Supplementary data

Journal Articles

Efimov-DNA phase diagram: Three stranded DNA on a cubic lattice

Somendra M. Bhattacharjee, Damien Paul Foster

J. Chem. Phys. 155, 064903 (2021)

https://doi.org/10.1063/5.0059153

Published: August 2021

View articletitled, Efimov-DNA phase diagram: Three stranded DNA on a cubic lattice

Journal Articles

Electron ratcheting in self-assembled soft matter

Jesús Valdiviezo, Peng Zhang, David N. Beratan

J. Chem. Phys. 155, 055102 (2021)

https://doi.org/10.1063/5.0044420

Published: August 2021

View articletitled, Electron ratcheting in self-assembled soft matter

Journal Articles

Long-lived Ag₁₀⁶⁺ luminescence and a split DNA scaffold

Jeffrey T. Petty, Savannah Carnahan, Dahye Kim, David Lewis

J. Chem. Phys. 154, 244302 (2021)

https://doi.org/10.1063/5.0056214

Published: June 2021

View articletitled, Long-lived Ag106+ luminescence and a split DNA scaffold

Includes: Supplementary data

Journal Articles

Assessing the sequence dependence of pyrimidine–pyrimidone (6–4) photoproduct in a duplex double-stranded DNA: A pitfall for microsecond range simulation

Natacha Gillet, Alessio Bartocci, Elise Dumont

J. Chem. Phys. 154, 135103 (2021)

https://doi.org/10.1063/5.0041332

Published: April 2021

View articletitled, Assessing the sequence dependence of pyrimidine–pyrimidone (6–4) photoproduct in a duplex double-stranded DNA: A pitfall for microsecond range simulation

Includes: Supplementary data

Journal Articles

Ultrafast excited state dynamics of silver ion-mediated cytosine–cytosine base pairs in metallo-DNA

Forrest R. Kohl, Yuyuan Zhang, Aaron P. Charnay, Lara Martínez-Fernández, Bern Kohler

J. Chem. Phys. 153, 105104 (2020)

https://doi.org/10.1063/5.0020463

Published: September 2020

View articletitled, Ultrafast excited state dynamics of silver ion-mediated cytosine–cytosine base pairs in metallo-DNA

Includes: Supplementary data

Journal Articles

Understanding enhanced mechanical stability of DNA in the presence of intercalated anticancer drug: Implications for DNA associated processes

Anil Kumar Sahoo, Biman Bagchi, Prabal K. Maiti

J. Chem. Phys. 151, 164902 (2019)

https://doi.org/10.1063/1.5117163

Published: October 2019

View articletitled, Understanding enhanced mechanical stability of DNA in the presence of intercalated anticancer drug: Implications for DNA associated processes

Includes: Supplementary data

Journal Articles

Note: Absolute electronic excitation cross sections for 8.5-17.5 eV electron scattering from condensed dimethyl phosphate (DMP)

V. Lemelin, A. D. Bass, L. Sanche

J. Chem. Phys. 149, 246101 (2018)

https://doi.org/10.1063/1.5059387

Published: December 2018

View articletitled, Note: Absolute electronic excitation cross sections for 8.5-17.5 eV electron scattering from condensed dimethyl phosphate (DMP)

Journal Articles

Promoting single-file DNA translocations through nanopores using electro-osmotic flow

Niklas Ermann, Nikita Hanikel, Vivian Wang, Kaikai Chen, Nicole E. Weckman, Ulrich F. Keyser

J. Chem. Phys. 149, 163311 (2018)

https://doi.org/10.1063/1.5031010

Published: July 2018

View articletitled, Promoting single-file DNA translocations through nanopores using electro-osmotic flow

Includes: Supplementary data

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A phase-field model for solutions of DNA-made particles

The conundrum of diffuse basis sets: A blessing for accuracy yet a curse for sparsity

Ultrafast spectroscopy study of DNA photophysics after proflavine intercalation

Silver induced chirality controlled spin filtration observed in ss-DNA functionalized with MoS₂

Coarse-grained modeling of DNA–RNA hybrids

Designing 3D multicomponent self-assembling systems with signal-passing building blocks

Heat capacity changes associated with G-quadruplex unfolding

Shape-induced crystallization of binary DNA-functionalized nanocubes

Ensemble inequivalence and negative extensibility in a strongly stretched wormlike chain with fluctuating bending stiffness

Diffusion mechanisms of DNA in agarose gels: NMR studies and Monte Carlo simulations

Can one detect intermediate denaturation states of DNA sequences by following the equilibrium open–close dynamic fluctuations of a single base pair?

A single nucleobase tunes nonradiative decay in a DNA-bound silver cluster

Efimov-DNA phase diagram: Three stranded DNA on a cubic lattice

Electron ratcheting in self-assembled soft matter

Long-lived Ag₁₀⁶⁺ luminescence and a split DNA scaffold

Assessing the sequence dependence of pyrimidine–pyrimidone (6–4) photoproduct in a duplex double-stranded DNA: A pitfall for microsecond range simulation

Ultrafast excited state dynamics of silver ion-mediated cytosine–cytosine base pairs in metallo-DNA

Understanding enhanced mechanical stability of DNA in the presence of intercalated anticancer drug: Implications for DNA associated processes

Note: Absolute electronic excitation cross sections for 8.5-17.5 eV electron scattering from condensed dimethyl phosphate (DMP)

Promoting single-file DNA translocations through nanopores using electro-osmotic flow

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