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Journal Articles

Role of tungsten disulfide quantum dots in specific protein–protein interactions at air–water interface

Harsharan Kaur, Mayank Garg, Deepak Tomar, Suman Singh, Kailash C. Jena
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 084705 (2024)
https://doi.org/10.1063/5.0187563
Published: February 2024
View article titled, Role of tungsten disulfide quantum dots in specific protein–protein interactions at air–water interface
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Includes: Supplementary data
Journal Articles

The effects of antigen size, binding site valency, and flexibility on fab-antigen binding near solid surfaces

Derek B. Bush, Thomas A. Knotts, IV
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 165102 (2018)
https://doi.org/10.1063/1.5045356
Published: October 2018
View article titled, The effects of antigen size, binding site valency, and flexibility on fab-antigen binding near solid surfaces
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Journal Articles

Modeling antigen-antibody nanoparticle bioconjugates and their polymorphs

Caroline Desgranges, Jerome Delhommelle
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 124507 (2018)
https://doi.org/10.1063/1.5018855
Published: March 2018
View article titled, Modeling antigen-antibody nanoparticle bioconjugates and their polymorphs
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Journal Articles

Binding free energy analysis of protein-protein docking model structures by evERdock

Kazuhiro Takemura, Nobuyuki Matubayasi, Akio Kitao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 105101 (2018)
https://doi.org/10.1063/1.5019864
Published: March 2018
View article titled, Binding free energy analysis of protein-protein docking model structures by evERdock
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Journal Articles

Forced-rupture of cell-adhesion complexes reveals abrupt switch between two brittle states

Scilight
Ngo Minh Toan, D. Thirumalai
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123332 (2018)
https://doi.org/10.1063/1.5011056
Published: March 2018
View article titled, Forced-rupture of cell-adhesion complexes reveals abrupt switch between two brittle states
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Journal Articles

Force feedback effects on single molecule hopping and pulling experiments

M. Rico-Pasto, I. Pastor, F. Ritort
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123327 (2018)
https://doi.org/10.1063/1.5010303
Published: February 2018
View article titled, Force feedback effects on single molecule hopping and pulling experiments
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Journal Articles

Probing the effects of surface hydrophobicity and tether orientation on antibody-antigen binding

Derek B. Bush, Thomas A. Knotts, IV
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 155103 (2017)
https://doi.org/10.1063/1.4980083
Published: April 2017
View article titled, Probing the effects of surface hydrophobicity and tether orientation on antibody-antigen binding
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Journal Articles

Sensitivity measurement of a cantilever-based surface stress sensor

Ann-Lauriene Haag, Zeno Schumacher, Peter Grutter
Journal: The Journal of Chemical Physics
J. Chem. Phys. 145, 154704 (2016)
https://doi.org/10.1063/1.4964922
Published: October 2016
View article titled, Sensitivity measurement of a cantilever-based surface stress sensor
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Journal Articles

Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability

Vo Hong Thanh, Corrado Priami, Roberto Zunino
Journal: The Journal of Chemical Physics
J. Chem. Phys. 144, 224108 (2016)
https://doi.org/10.1063/1.4953559
Published: June 2016
View article titled, Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability
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Journal Articles

Communication: Antibody stability and behavior on surfaces

Derek B. Bush, Thomas A. Knotts, IV
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 061101 (2015)
https://doi.org/10.1063/1.4928455
Published: August 2015
View article titled, Communication: Antibody stability and behavior on surfaces
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Includes: Supplementary data
Journal Articles

Phase transitions in human IgG solutions

Ying Wang, Aleksey Lomakin, Ramil F. Latypov, Jacob P. Laubach, Teru Hideshima, Paul G. Richardson, Nikhil C. Munshi, Kenneth C. Anderson, George B. Benedek
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 121904 (2013)
https://doi.org/10.1063/1.4811345
Published: July 2013
View article titled, Phase transitions in human IgG solutions
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Journal Articles

Multiple barriers in forced rupture of protein complexes

Changbong Hyeon, D. Thirumalai
Journal: The Journal of Chemical Physics
J. Chem. Phys. 137, 055103 (2012)
https://doi.org/10.1063/1.4739747
Published: August 2012
View article titled, Multiple barriers in forced rupture of protein complexes
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Journal Articles

Only signaling modules that discriminate sharply between stimulatory and nonstimulatory inputs require basal signaling for fast cellular responses

Mykyta Artomov, Mehran Kardar, Arup K. Chakraborty
Journal: The Journal of Chemical Physics
J. Chem. Phys. 133, 105101 (2010)
https://doi.org/10.1063/1.3482813
Published: September 2010
View article titled, Only signaling modules that discriminate sharply between stimulatory and nonstimulatory inputs require basal signaling for fast cellular responses
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Includes: Supplementary data
Journal Articles

Specificity and completion time distributions of biochemical processes

Brian Munsky, Ilya Nemenman, Golan Bel
Journal: The Journal of Chemical Physics
J. Chem. Phys. 131, 235103 (2009)
https://doi.org/10.1063/1.3274803
Published: December 2009
View article titled, Specificity and completion time distributions of biochemical processes
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Journal Articles

Intermolecular vibrational energy exchange directly probed with ultrafast two dimensional infrared spectroscopy

Hongtao Bian, Wei Zhao, Junrong Zheng
Journal: The Journal of Chemical Physics
J. Chem. Phys. 131, 124501 (2009)
https://doi.org/10.1063/1.3212618
Published: September 2009
View article titled, Intermolecular vibrational energy exchange directly probed with ultrafast two dimensional infrared spectroscopy
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Includes: Supplementary data
Journal Articles

A hybrid recursion method to robustly ensure convergence efficiencies in the simulated scaling based free energy simulations

Lianqing Zheng, Irina O. Carbone, Alexey Lugovskoy, Bernd A. Berg, Wei Yang
Journal: The Journal of Chemical Physics
J. Chem. Phys. 129, 034105 (2008)
https://doi.org/10.1063/1.2953321
Published: July 2008
View article titled, A hybrid recursion method to robustly ensure convergence efficiencies in the simulated scaling based free energy simulations
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Journal Articles

Forced dissociation of a biomolecular complex under periodic and correlated random forcing

Han-Jou Lin, Yu-Jane Sheng, Hsuan-Yi Chen, Heng-Kwong Tsao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 128, 084708 (2008)
https://doi.org/10.1063/1.2841404
Published: February 2008
View article titled, Forced dissociation of a biomolecular complex under periodic and correlated random forcing
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Journal Articles

Exact solution for anisotropic diffusion-controlled reactions with partially reflecting conditions

Sergey D. Traytak, William S. Price
Journal: The Journal of Chemical Physics
J. Chem. Phys. 127, 184508 (2007)
https://doi.org/10.1063/1.2786452
Published: November 2007
View article titled, Exact solution for anisotropic diffusion-controlled reactions with partially reflecting conditions
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Journal Articles

Kinetics of protein binding in solid-phase immunoassays: Theory

Konstantin V. Klenin, Wlad Kusnezow, Jörg Langowski
Journal: The Journal of Chemical Physics
J. Chem. Phys. 122, 214715 (2005)
https://doi.org/10.1063/1.1927510
Published: June 2005
View article titled, Kinetics of protein binding in solid-phase immunoassays: Theory
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