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Journal Articles

Determining the impact of gold nanoparticles on amyloid aggregation with 2D IR spectroscopy

Kayla A. Hess, Nathan J. Spear, Sophia A. Vogelsang, Janet E. Macdonald, Lauren E. Buchanan
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 091101 (2023)
https://doi.org/10.1063/5.0136376
Published: March 2023
View article titled, Determining the impact of gold nanoparticles on amyloid aggregation with 2D IR spectroscopy
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Includes: Supplementary data
Journal Articles

Insulin aspart dimer dissociation in water

Yagya Chaudhary, Prabhakar Bhimalapuram
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 105106 (2022)
https://doi.org/10.1063/5.0078738
Published: March 2022
View article titled, Insulin aspart dimer dissociation in water
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Includes: Supplementary data
Journal Articles

Distinguishing islet amyloid polypeptide fibril structures with infrared isotope-label spectroscopy

Vishesh Saxena, Ruben Steendam, Thomas L. C. Jansen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 055101 (2022)
https://doi.org/10.1063/5.0082322
Published: February 2022
View article titled, Distinguishing islet amyloid polypeptide fibril structures with infrared isotope-label spectroscopy
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Journal Articles

Local vibrational mode analysis of ion–solvent and solvent–solvent interactions for hydrated Ca2+ clusters

Alexis A. A. Delgado, Daniel Sethio, Ipek Munar, Viktorya Aviyente, Elfi Kraka
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 224303 (2020)
https://doi.org/10.1063/5.0034765
Published: December 2020
View article titled, Local vibrational mode analysis of ion–solvent and solvent–solvent interactions for hydrated Ca<sup>2+</sup> clusters
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Includes: Supplementary data
Journal Articles

Insulin dimer dissociation in aqueous solution: A computational study of free energy landscape and evolving microscopic structure along the reaction pathway

Puja Banerjee, Sayantan Mondal, Biman Bagchi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 114902 (2018)
https://doi.org/10.1063/1.5042290
Published: September 2018
View article titled, Insulin dimer dissociation in aqueous solution: A computational study of free energy landscape and evolving microscopic structure along the reaction pathway
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Journal Articles

Early-stage human islet amyloid polypeptide aggregation: Mechanisms behind dimer formation

Ashley Z. Guo, Aaron M. Fluitt, Juan J. de Pablo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 025101 (2018)
https://doi.org/10.1063/1.5033458
Published: July 2018
View article titled, Early-stage human islet amyloid polypeptide aggregation: Mechanisms behind dimer formation
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Journal Articles

Water entrapment and structure ordering as protection mechanisms for protein structural preservation

A. Arsiccio, R. Pisano
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 055102 (2018)
https://doi.org/10.1063/1.5012884
Published: February 2018
View article titled, Water entrapment and structure ordering as protection mechanisms for protein structural preservation
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Journal Articles

Internal friction in an intrinsically disordered protein—Comparing Rouse-like models with experiments

Andrea Soranno, Franziska Zosel, Hagen Hofmann
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123326 (2018)
https://doi.org/10.1063/1.5009286
Published: January 2018
View article titled, Internal friction in an intrinsically disordered protein—Comparing Rouse-like models with experiments
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Journal Articles

Characterizing protein conformations by correlation analysis of coarse-grained contact matrices

Richard J. Lindsay, Jan Siess, David P. Lohry, Trevor S. McGee, Jordan S. Ritchie, Quentin R. Johnson, Tongye Shen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 025101 (2018)
https://doi.org/10.1063/1.5004141
Published: January 2018
View article titled, Characterizing protein conformations by correlation analysis of coarse-grained contact matrices
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Includes: Supplementary data
Journal Articles

Naturally occurring branched-chain polyamines induce a crosslinked meshwork structure in a giant DNA

Akira Muramatsu, Yuta Shimizu, Yuko Yoshikawa, Wakao Fukuda, Naoki Umezawa, Yuhei Horai, Tsunehiko Higuchi, Shinsuke Fujiwara, Tadayuki Imanaka, Kenichi Yoshikawa
Journal: The Journal of Chemical Physics
J. Chem. Phys. 145, 235103 (2016)
https://doi.org/10.1063/1.4972066
Published: December 2016
View article titled, Naturally occurring branched-chain polyamines induce a crosslinked meshwork structure in a giant DNA
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Includes: Supplementary data
Journal Articles

Aspects of structural landscape of human islet amyloid polypeptide

Jianfeng He, Jin Dai, Jing Li, Xubiao Peng, Antti J. Niemi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 045102 (2015)
https://doi.org/10.1063/1.4905586
Published: January 2015
View article titled, Aspects of structural landscape of human islet amyloid polypeptide
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Journal Articles

Dewetting transition assisted clearance of (NFGAILS) amyloid fibrils from cell membranes by graphene

Jiajia Liu, Zaixing Yang, Haotian Li, Zonglin Gu, Jose Antonio Garate, Ruhong Zhou
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 22D520 (2014)
https://doi.org/10.1063/1.4901113
Published: November 2014
View article titled, Dewetting transition assisted clearance of (NFGAILS) amyloid fibrils from cell membranes by graphene
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Journal Articles

Early oligomerization stages for the non-amyloid component of α-synuclein amyloid

Cindie Eugene, Rozita Laghaei, Normand Mousseau
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 135103 (2014)
https://doi.org/10.1063/1.4896381
Published: October 2014
View article titled, Early oligomerization stages for the non-amyloid component of α-synuclein amyloid
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Journal Articles

Accurate measurements of 13C-13C distances in uniformly 13C-labeled proteins using multi-dimensional four-oscillating field solid-state NMR spectroscopy

Lasse Arnt Straasø, Jakob Toudahl Nielsen, Morten Bjerring, Navin Khaneja, Niels Chr. Nielsen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 141, 114201 (2014)
https://doi.org/10.1063/1.4895527
Published: September 2014
View article titled, Accurate measurements of <sup>13</sup>C-<sup>13</sup>C distances in uniformly <sup>13</sup>C-labeled proteins using multi-dimensional four-oscillating field solid-state NMR spectroscopy
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Journal Articles

Molecular ageing: Free radical initiated epimerization of thymopentin – A case study

Dayag Sheykhkarimli, Ken-Loon Choo, Michael Owen, Béla Fiser, Balázs Jójárt, Imre G. Csizmadia, Béla Viskolcz
Journal: The Journal of Chemical Physics
J. Chem. Phys. 140, 205102 (2014)
https://doi.org/10.1063/1.4871684
Published: May 2014
View article titled, Molecular ageing: Free radical initiated epimerization of thymopentin – A case study
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Includes: Supplementary data
Journal Articles

Resonance electron attachment to plant hormones and its likely connection with biochemical processes

Stanislav A. Pshenichnyuk, Alberto Modelli
Journal: The Journal of Chemical Physics
J. Chem. Phys. 140, 034313 (2014)
https://doi.org/10.1063/1.4861497
Published: January 2014
View article titled, Resonance electron attachment to plant hormones and its likely connection with biochemical processes
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Journal Articles

Acidic pH retards the fibrillization of human islet amyloid polypeptide due to electrostatic repulsion of histidines

Yang Li, Weixin Xu, Yuguang Mu, John Z. H. Zhang
Journal: The Journal of Chemical Physics
J. Chem. Phys. 139, 055102 (2013)
https://doi.org/10.1063/1.4817000
Published: August 2013
View article titled, Acidic pH retards the fibrillization of human islet amyloid polypeptide due to electrostatic repulsion of histidines
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Journal Articles

α-helix to β-hairpin transition of human amylin monomer

Sadanand Singh, Chi-cheng Chiu, Allam S. Reddy, Juan J. de Pablo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 155101 (2013)
https://doi.org/10.1063/1.4798460
Published: April 2013
View article titled, α-helix to β-hairpin transition of human amylin monomer
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Includes: Supplementary data
Journal Articles

Recoupling of native homonuclear dipolar couplings in magic-angle-spinning solid-state NMR by the double-oscillating field technique

Lasse Arnt Straasø, Niels Chr. Nielsen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 133, 064501 (2010)
https://doi.org/10.1063/1.3464334
Published: August 2010
View article titled, Recoupling of native homonuclear dipolar couplings in magic-angle-spinning solid-state NMR by the double-oscillating field technique
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Journal Articles

Assembly dynamics of two- β sheets revealed by molecular dynamics simulations

Weixin Xu, Jiang Ping, Weifeng Li, Yuguang Mu
Journal: The Journal of Chemical Physics
J. Chem. Phys. 130, 164709 (2009)
https://doi.org/10.1063/1.3123532
Published: April 2009
View article titled, Assembly dynamics of two- β sheets revealed by molecular dynamics simulations
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