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Journal Articles

Precision, intelligence, and a new paradigm for chemical research

Editor’s PickFree
Shuo Feng, Jun Jiang, Zhenyu Li
Journal: The Journal of Chemical Physics
J. Chem. Phys. 162, 170901 (2025)
https://doi.org/10.1063/5.0262187
Published: May 2025
View articletitled, Precision, intelligence, and a new paradigm for chemical research
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Journal Articles

Interfacial water on collagen nanoribbons by 3D AFM

Open Access
Diana M. Arvelo, Clara Garcia-Sacristan, Enrique Chacón, Pedro Tarazona, Ricardo Garcia
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 164714 (2024)
https://doi.org/10.1063/5.0205611
Published: April 2024
View articletitled, Interfacial water on collagen nanoribbons by 3D AFM
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Includes: Supplementary data
Journal Articles

Deciphering the free energy landscapes of SARS-CoV-2 wild type and Omicron variant interacting with human ACE2

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Pham Dang Lan, Daniel A. Nissley, Edward P. O’Brien, Toan T. Nguyen, Mai Suan Li
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 055101 (2024)
https://doi.org/10.1063/5.0188053
Published: February 2024
View articletitled, Deciphering the free energy landscapes of SARS-CoV-2 wild type and Omicron variant interacting with human ACE2
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Includes: Supplementary data
Journal Articles

Probing chiral discrimination in biological systems using atomic force microscopy: The role of van der Waals and exchange interactions

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Yael Kapon, Qirong Zhu, Shira Yochelis, Ron Naaman, Rafael Gutierrez, Giannaurelio Cuniberti, Yossi Paltiel, Vladimiro Mujica
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 224702 (2023)
https://doi.org/10.1063/5.0171742
Published: December 2023
View articletitled, Probing chiral discrimination in biological systems using atomic force microscopy: The role of van der Waals and exchange interactions
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Journal Articles

Remote regulation on the hydration sites of adenine molecules via derivatization

Free
Yuanqi Ding, Chi Zhang, Lei Xie, Wei Xu
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 221101 (2023)
https://doi.org/10.1063/5.0182990
Published: December 2023
View articletitled, Remote regulation on the hydration sites of adenine molecules via derivatization
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Includes: Supplementary data
Journal Articles

Bacterial extracellular electron transfer components are spin selective

Open Access
Christina M. Niman, Nir Sukenik, Tram Dang, Justus Nwachukwu, Miyuki A. Thirumurthy, Anne K. Jones, Ron Naaman, Kakali Santra, Tapan K. Das, Yossi Paltiel, Lech Tomasz Baczewski, Mohamed Y. El-Naggar
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 145101 (2023)
https://doi.org/10.1063/5.0154211
Published: October 2023
View articletitled, Bacterial extracellular electron transfer components are spin selective
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Includes: Supplementary data
Journal Articles

Effect of solid support and membrane tension on adsorption and lateral interaction of amphipathic peptides

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Oleg V. Kondrashov, Sergey A. Akimov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 074902 (2022)
https://doi.org/10.1063/5.0096536
Published: August 2022
View articletitled, Effect of solid support and membrane tension on adsorption and lateral interaction of amphipathic peptides
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Journal Articles

The competing influence of surface roughness, hydrophobicity, and electrostatics on protein dynamics on a self-assembled monolayer

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Anastasiia Misiura, Chayan Dutta, Wesley Leung, Jorge Zepeda O, Tanguy Terlier, Christy F. Landes
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 094707 (2022)
https://doi.org/10.1063/5.0078797
Published: March 2022
View articletitled, The competing influence of surface roughness, hydrophobicity, and electrostatics on protein dynamics on a self-assembled monolayer
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Includes: Supplementary data
Journal Articles

Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics

Open Access
Sarah Mapplebeck, Jonathan Booth, Dmitrii Shalashilin
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 085101 (2021)
https://doi.org/10.1063/5.0059321
Published: August 2021
View articletitled, Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics
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Journal Articles

Comparison of atomic force microscopy force curve and solvation structure studied by integral equation theory

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Kota Hashimoto, Ken-ichi Amano, Naoya Nishi, Hiroshi Onishi, Tetsuo Sakka
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 164702 (2021)
https://doi.org/10.1063/5.0046600
Published: April 2021
View articletitled, Comparison of atomic force microscopy force curve and solvation structure studied by integral equation theory
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Includes: Supplementary data
Journal Articles

Kinetics of molecular decomposition under irradiation of gold nanoparticles with nanosecond laser pulses—A 5-Bromouracil case study

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Telma S. Marques, Robin Schürmann, Kenny Ebel, Christian Heck, Małgorzata A. Śmiałek, Sam Eden, Nigel Mason, Ilko Bald
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 124712 (2020)
https://doi.org/10.1063/1.5137898
Published: March 2020
View articletitled, Kinetics of molecular decomposition under irradiation of gold nanoparticles with nanosecond laser pulses—A 5-Bromouracil case study
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Includes: Supplementary data
Journal Articles

Tannin-controlled micelles and fibrils of κ-casein

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Wei Ma, Christophe Tribet, Sylvain Guyot, Dražen Zanchi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 245103 (2019)
https://doi.org/10.1063/1.5128057
Published: December 2019
View articletitled, Tannin-controlled micelles and fibrils of κ-casein
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Includes: Supplementary data
Journal Articles

Density functional analysis of atomic force microscopy in a dense fluid

Editor’s PickAvailable to Purchase
Jose Hernández-Muñoz, Enrique Chacón, Pedro Tarazona
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 034701 (2019)
https://doi.org/10.1063/1.5110366
Published: July 2019
View articletitled, Density functional analysis of atomic force microscopy in a dense fluid
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Journal Articles

Fickian and thermal diffusion coefficients of binary mixtures of isobutylbenzene and n-alkanes at different concentrations from the optical beam deflection technique

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Filipe Arantes Furtado, Abbas Firoozabadi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 024202 (2019)
https://doi.org/10.1063/1.5082963
Published: July 2019
View articletitled, Fickian and thermal diffusion coefficients of binary mixtures of isobutylbenzene and n-alkanes at different concentrations from the optical beam deflection technique
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Journal Articles

Self-assembling of formic acid on the partially oxidized p(2 × 1) Cu(110) surface reconstruction at low coverages

Free
Zhu Chen, John Mark P. Martirez, Percy Zahl, Emily A. Carter, Bruce E. Koel
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 041720 (2019)
https://doi.org/10.1063/1.5046697
Published: December 2018
View articletitled, Self-assembling of formic acid on the partially oxidized p(2 × 1) Cu(110) surface reconstruction at low coverages
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Includes: Supplementary data
Journal Articles

Electrostatic effects in collagen fibril formation

Free
Svetlana Morozova, Murugappan Muthukumar
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 163333 (2018)
https://doi.org/10.1063/1.5036526
Published: August 2018
View articletitled, Electrostatic effects in collagen fibril formation
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Journal Articles

Two-stage DNA compaction induced by silver ions suggests a cooperative binding mechanism

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Wen-Yan Jiang, Shi-Yong Ran
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 205102 (2018)
https://doi.org/10.1063/1.5025348
Published: May 2018
View articletitled, Two-stage DNA compaction induced by silver ions suggests a cooperative binding mechanism
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Journal Articles

High-speed atomic force microscopy reveals structural dynamics of α -synuclein monomers and dimers

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Yuliang Zhang, Mohtadin Hashemi, Zhengjian Lv, Benfeard Williams, Konstantin I. Popov, Nikolay V. Dokholyan, Yuri L. Lyubchenko
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123322 (2018)
https://doi.org/10.1063/1.5008874
Published: January 2018
View articletitled, High-speed atomic force microscopy reveals structural dynamics of α -synuclein monomers and dimers
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Includes: Supplementary data
Journal Articles

Improved free-energy landscape reconstruction of bacteriorhodopsin highlights local variations in unfolding energy

Free
Patrick R. Heenan, Hao Yu, Matthew G. W. Siewny, Thomas T. Perkins
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123313 (2018)
https://doi.org/10.1063/1.5009108
Published: December 2017
View articletitled, Improved free-energy landscape reconstruction of bacteriorhodopsin highlights local variations in unfolding energy
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Includes: Supplementary data
Journal Articles

Interaction of von Willebrand factor domains with collagen investigated by single molecule force spectroscopy

Open Access
Sandra Posch, Tobias Obser, Gesa König, Reinhard Schneppenheim, Robert Tampé, Peter Hinterdorfer
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123310 (2018)
https://doi.org/10.1063/1.5007313
Published: December 2017
View articletitled, Interaction of von Willebrand factor domains with collagen investigated by single molecule force spectroscopy
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Includes: Supplementary data