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Journal Articles

Manifestations of static and dynamic heterogeneity in single molecule translational measurements in glassy systems

Nicole L. Mandel, Talha Rehman, Laura J. Kaufman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 184506 (2022)
https://doi.org/10.1063/5.0118892
Published: November 2022
View article titled, Manifestations of static and dynamic heterogeneity in single molecule translational measurements in glassy systems
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Includes: Supplementary data
Journal Articles

Observation of conformational dynamics in single light-harvesting proteins from cryptophyte algae

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Raymundo Moya, Audrey C. Norris, Leah C. Spangler, Gregory D. Scholes, Gabriela S. Schlau-Cohen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 035102 (2022)
https://doi.org/10.1063/5.0095763
Published: July 2022
View article titled, Observation of conformational dynamics in single light-harvesting proteins from cryptophyte algae
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Includes: Supplementary data
Journal Articles

Photostable fluorescent molecules on layered hexagonal boron nitride: Ideal single-photon sources at room temperature

Shuangping Han, Chengbing Qin, Yunrui Song, Shuai Dong, Yu Lei, Shen Wang, Xingliang Su, Aoni Wei, Xiangdong Li, Guofeng Zhang, Ruiyun Chen, Jianyong Hu, Liantuan Xiao, Suotang Jia
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 244301 (2021)
https://doi.org/10.1063/5.0074706
Published: December 2021
View article titled, Photostable fluorescent molecules on layered hexagonal boron nitride: Ideal single-photon sources at room temperature
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Includes: Supplementary data
Journal Articles

Role of shell composition and morphology in achieving single-emitter photostability for green-emitting “giant” quantum dots

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James R. McBride, Nimai Mishra, Sophia M. Click, Noah J. Orfield, Feng Wang, Krishna Acharya, Matthew F. Chisholm, Han Htoon, Sandra J. Rosenthal, Jennifer A. Hollingsworth
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 124713 (2020)
https://doi.org/10.1063/5.0002772
Published: March 2020
View article titled, Role of shell composition and morphology in achieving single-emitter photostability for green-emitting “giant” quantum dots
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Includes: Supplementary data
Journal Articles

Bayesian counting of photobleaching steps with physical priors

Jon Garry, Yuchong Li, Brandon Shew, Claudiu C. Gradinaru, Andrew D. Rutenberg
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 024110 (2020)
https://doi.org/10.1063/1.5132957
Published: January 2020
View article titled, Bayesian counting of photobleaching steps with physical priors
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Includes: Supplementary data
Journal Articles

Which probes can report intrinsic dynamic heterogeneity of a glass forming liquid?

Keewook Paeng, Laura J. Kaufman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 164501 (2018)
https://doi.org/10.1063/1.5047215
Published: October 2018
View article titled, Which probes can report intrinsic dynamic heterogeneity of a glass forming liquid?
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Includes: Supplementary data
Journal Articles

Single molecule studies reveal temperature independence of lifetime of dynamic heterogeneity in polystyrene

Editor’s Pick
Alyssa S. Manz, Keewook Paeng, Laura J. Kaufman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 204508 (2018)
https://doi.org/10.1063/1.5031131
Published: May 2018
View article titled, Single molecule studies reveal temperature independence of lifetime of dynamic heterogeneity in polystyrene
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Includes: Supplementary data
Journal Articles

Persistent optical hole-burning spectroscopy of nano-confined dye molecules in liquid at room temperature: Spectral narrowing due to a glassy state and extraordinary relaxation in a nano-cage

Hiroshi Murakami
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 144505 (2018)
https://doi.org/10.1063/1.5008448
Published: April 2018
View article titled, Persistent optical hole-burning spectroscopy of nano-confined dye molecules in liquid at room temperature: Spectral narrowing due to a glassy state and extraordinary relaxation in a nano-cage
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Journal Articles

Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding

Editor’s Pick
J. Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123325 (2018)
https://doi.org/10.1063/1.5016487
Published: January 2018
View article titled, Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding
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Includes: Supplementary data
Journal Articles

Single-molecule diffusometry reveals the nucleotide-dependent oligomerization pathways of Nicotiana tabacum Rubisco activase

Quan Wang, Andrew J. Serban, Rebekka M. Wachter, W. E. Moerner
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 123319 (2018)
https://doi.org/10.1063/1.5005930
Published: January 2018
View article titled, Single-molecule diffusometry reveals the nucleotide-dependent oligomerization pathways of <em>Nicotiana tabacum</em> Rubisco activase
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Includes: Supplementary data
Journal Articles

Photobleaching of randomly rotating fluorescently decorated particles

Swadhin Taneja, Andrew D. Rutenberg
Journal: The Journal of Chemical Physics
J. Chem. Phys. 147, 104105 (2017)
https://doi.org/10.1063/1.4989673
Published: September 2017
View article titled, Photobleaching of randomly rotating fluorescently decorated particles
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Journal Articles

The escape problem for mortal walkers

D. S. Grebenkov, J.-F. Rupprecht
Journal: The Journal of Chemical Physics
J. Chem. Phys. 146, 084106 (2017)
https://doi.org/10.1063/1.4976522
Published: February 2017
View article titled, The escape problem for mortal walkers
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Journal Articles

Solvent and solute ingress into hydrogels resolved by a combination of imaging techniques

D. Wagner, J. Burbach, C. Grünzweig, S. Hartmann, E. Lehmann, S. U. Egelhaaf, H. E. Hermes
Journal: The Journal of Chemical Physics
J. Chem. Phys. 144, 204903 (2016)
https://doi.org/10.1063/1.4950954
Published: May 2016
View article titled, Solvent and solute ingress into hydrogels resolved by a combination of imaging techniques
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Includes: Supplementary data
Journal Articles

Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores

Huong T. Kratochvil, Dong G. Ha, Martin T. Zanni
Journal: The Journal of Chemical Physics
J. Chem. Phys. 143, 104201 (2015)
https://doi.org/10.1063/1.4929991
Published: September 2015
View article titled, Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores
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Journal Articles

Revealing and resolving degeneracies in stretching exponents in temporally heterogeneous environments

Kevin Stokely, Alyssa S. Manz, Laura J. Kaufman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 142, 114504 (2015)
https://doi.org/10.1063/1.4915267
Published: March 2015
View article titled, Revealing and resolving degeneracies in stretching exponents in temporally heterogeneous environments
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Journal Articles

Origins of the two simultaneous mechanisms causing glass transition temperature reductions in high molecular weight freestanding polymer films

Daniele Prevosto, Simone Capaccioli, K. L. Ngai
Journal: The Journal of Chemical Physics
J. Chem. Phys. 140, 074903 (2014)
https://doi.org/10.1063/1.4865752
Published: February 2014
View article titled, Origins of the two simultaneous mechanisms causing glass transition temperature reductions in high molecular weight freestanding polymer films
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Journal Articles

Relaxation of enthalpy fluctuations during sub-Tg annealing of glassy selenium

Ozgur Gulbiten, John C. Mauro, Pierre Lucas
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 244504 (2013)
https://doi.org/10.1063/1.4811488
Published: June 2013
View article titled, Relaxation of enthalpy fluctuations during sub-T<sub>g</sub> annealing of glassy selenium
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Journal Articles

Optimization of nonlinear optical localization using electromagnetic surface fields (NOLES) imaging

Jeremy W. Jarrett, Manabendra Chandra, Kenneth L. Knappenberger, Jr.
Journal: The Journal of Chemical Physics
J. Chem. Phys. 138, 214202 (2013)
https://doi.org/10.1063/1.4808161
Published: June 2013
View article titled, Optimization of nonlinear optical localization using electromagnetic surface fields (NOLES) imaging
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Journal Articles

Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry

Prem P. Chapagain, Chola K. Regmi, William Castillo
Journal: The Journal of Chemical Physics
J. Chem. Phys. 135, 235101 (2011)
https://doi.org/10.1063/1.3660197
Published: December 2011
View article titled, Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry
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Journal Articles

Communication: Stabilization of radical anions with weakly bound electron in condensed media: A case study of diacetonyl radical anion

Elizaveta V. Saenko, Dimitri N. Laikov, Irina A. Baranova, Vladimir I. Feldman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 135, 101103 (2011)
https://doi.org/10.1063/1.3638690
Published: September 2011
View article titled, Communication: Stabilization of radical anions with weakly bound electron in condensed media: A case study of diacetonyl radical anion
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Includes: Supplementary data