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Journal Articles

Non-Markovian effects of conformational fluctuations on the global diffusivity in Langevin equation with fluctuating diffusivity

Mutsumi Kimura, Takuma Akimoto
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 055102 (2023)
https://doi.org/10.1063/5.0156073
Published: August 2023
View article titled, Non-Markovian effects of conformational fluctuations on the global diffusivity in Langevin equation with fluctuating diffusivity
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Journal Articles

Nonequilibrium diffusion of active particles bound to a semiflexible polymer network: Simulations and fractional Langevin equation

Hyeong-Tark Han, Sungmin Joo, Takahiro Sakaue, Jae-Hyung Jeon
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 024901 (2023)
https://doi.org/10.1063/5.0150224
Published: July 2023
View article titled, Nonequilibrium diffusion of active particles bound to a semiflexible polymer network: Simulations and fractional Langevin equation
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Journal Articles

Electrostatic hindrance to diffusion in flexible crosslinked gels: A coarse-grained simulation study

Luis Pérez-Mas, María del Mar Ramos-Tejada, Alberto Martín-Molina, José-Alberto Maroto-Centeno, Manuel Quesada-Pérez
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 014903 (2023)
https://doi.org/10.1063/5.0151353
Published: July 2023
View article titled, Electrostatic hindrance to diffusion in flexible crosslinked gels: A coarse-grained simulation study
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Journal Articles

Diffusion-controlled reactions with non-Markovian binding/unbinding kinetics

Denis S. Grebenkov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 214111 (2023)
https://doi.org/10.1063/5.0146512
Published: June 2023
View article titled, Diffusion-controlled reactions with non-Markovian binding/unbinding kinetics
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Journal Articles

Nuclear magnetic resonance signal decay in the presence of a background gradient: Normal and anomalous diffusion

G. Costantini, S. Capuani, F. A. Farrelly, A. Taloni
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 174106 (2023)
https://doi.org/10.1063/5.0148175
Published: May 2023
View article titled, Nuclear magnetic resonance signal decay in the presence of a background gradient: Normal and anomalous diffusion
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Journal Articles

Conformation and dynamics of an active filament in crowded media

Ran Yan, Fei Tan, Jingli Wang, Nanrong Zhao
Journal: The Journal of Chemical Physics
J. Chem. Phys. 158, 114905 (2023)
https://doi.org/10.1063/5.0142559
Published: March 2023
View article titled, Conformation and dynamics of an active filament in crowded media
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Includes: Supplementary data
Journal Articles

On the theory of the spin I = 1/2 double quantum NMR: Effects of spins spatial displacements between RF pulses

I. V. Brekotkin, N. F. Fatkullin, K. Lindt, C. Mattea, S. Stapf
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 224108 (2022)
https://doi.org/10.1063/5.0124510
Published: December 2022
View article titled, On the theory of the spin I = 1/2 double quantum NMR: Effects of spins spatial displacements between RF pulses
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Journal Articles

Molecular simulation of hopping mechanisms of nanoparticles in regular cross-linked polymer networks

Bo-Ran Zhao, Bin Li
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 104901 (2022)
https://doi.org/10.1063/5.0098947
Published: September 2022
View article titled, Molecular simulation of hopping mechanisms of nanoparticles in regular cross-linked polymer networks
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Includes: Supplementary data
Journal Articles

Anisotropic diffusion of membrane proteins at experimental timescales

Matti Javanainen, Hector Martinez-Seara, Christopher V. Kelly, Pavel Jungwirth, Balázs Fábián
Journal: The Journal of Chemical Physics
J. Chem. Phys. 155, 015102 (2021)
https://doi.org/10.1063/5.0054973
Published: July 2021
View article titled, Anisotropic diffusion of membrane proteins at experimental timescales
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Journal Articles

Water diffusion in carbon nanotubes: Interplay between confinement, surface deformation, and temperature

Bruno H. S. Mendonça, Patricia Ternes, Evy Salcedo, Alan B. de Oliveira, Marcia C. Barbosa
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 244504 (2020)
https://doi.org/10.1063/5.0031084
Published: December 2020
View article titled, Water diffusion in carbon nanotubes: Interplay between confinement, surface deformation, and temperature
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Journal Articles

Polymer escape through a three dimensional double-nanopore system

Swarnadeep Seth, Aniket Bhattacharya
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 104901 (2020)
https://doi.org/10.1063/5.0015310
Published: September 2020
View article titled, Polymer escape through a three dimensional double-nanopore system
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Journal Articles

Generalization to anomalous diffusion of Budó’s treatment of polar molecules containing interacting rotating groups

S. V. Titov, W. T. Coffey, M. Zarifakis, Y. P. Kalmykov, M. H. Al Bayyari, W. J. Dowling
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 044128 (2020)
https://doi.org/10.1063/5.0015036
Published: July 2020
View article titled, Generalization to anomalous diffusion of Budó’s treatment of polar molecules containing interacting rotating groups
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Journal Articles

Optimal estimates of self-diffusion coefficients from molecular dynamics simulations

Jakob Tómas Bullerjahn, Sören von Bülow, Gerhard Hummer
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 024116 (2020)
https://doi.org/10.1063/5.0008312
Published: July 2020
View article titled, Optimal estimates of self-diffusion coefficients from molecular dynamics simulations
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Journal Articles

Anomalous diffusion of a dipole interacting with its surroundings

Y. P. Kalmykov, S. V. Titov, W. T. Coffey, M. Zarifakis, W. J. Dowling, A. S. Titov
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 114101 (2020)
https://doi.org/10.1063/1.5139954
Published: March 2020
View article titled, Anomalous diffusion of a dipole interacting with its surroundings
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Journal Articles

Heterogeneous dynamics of unentangled chains in polymer nanocomposites

Li-Jun Dai, Cui-Liu Fu, You-Liang Zhu, Zhao-Yan Sun
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 184903 (2019)
https://doi.org/10.1063/1.5089816
Published: May 2019
View article titled, Heterogeneous dynamics of unentangled chains in polymer nanocomposites
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Includes: Supplementary data
Journal Articles

Ergodic properties of heterogeneous diffusion processes in a potential well

Xudong Wang, Weihua Deng, Yao Chen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 164121 (2019)
https://doi.org/10.1063/1.5090594
Published: April 2019
View article titled, Ergodic properties of heterogeneous diffusion processes in a potential well
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Journal Articles

Unfolding of a diblock chain and its anomalous diffusion induced by active particles

Yi-qi Xia, Zhuang-lin Shen, Wen-de Tian, Kang Chen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 154903 (2019)
https://doi.org/10.1063/1.5095850
Published: April 2019
View article titled, Unfolding of a diblock chain and its anomalous diffusion induced by active particles
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Includes: Supplementary data
Journal Articles

Transient superdiffusion of polydisperse vacuoles in highly motile amoeboid cells

Samudrajit Thapa, Nils Lukat, Christine Selhuber-Unkel, Andrey G. Cherstvy, Ralf Metzler
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 144901 (2019)
https://doi.org/10.1063/1.5086269
Published: April 2019
View article titled, Transient superdiffusion of polydisperse vacuoles in highly motile amoeboid cells
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Includes: Supplementary data
Journal Articles

Transient anomalous diffusion with Prabhakar-type memory

Aleksander Stanislavsky, Aleksander Weron
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 044107 (2018)
https://doi.org/10.1063/1.5042075
Published: July 2018
View article titled, Transient anomalous diffusion with Prabhakar-type memory
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Journal Articles

Detection of ε-ergodicity breaking in experimental data—A study of the dynamical functional sensibility

Hanna Loch-Olszewska, Janusz Szwabiński
Journal: The Journal of Chemical Physics
J. Chem. Phys. 148, 204105 (2018)
https://doi.org/10.1063/1.5025941
Published: May 2018
View article titled, Detection of <em>ε</em>-ergodicity breaking in experimental data—A study of the dynamical functional sensibility
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