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Probing exciton diffusion dynamics in photosynthetic supercomplexes via exciton–exciton annihilation

Kunyan Zhang, Tsung-Yen Lee, Shiun-Jr Yang, Trisha Bhagde, Masakazu Iwai, Graham R. Fleming

J. Chem. Phys. 162, 164201 (2025)

https://doi.org/10.1063/5.0251771

Published: April 2025

View articletitled, Probing exciton diffusion dynamics in photosynthetic supercomplexes via exciton–exciton annihilation

Journal Articles

Copula methods for modeling pair densities in density functional theory

Geneviève Dusson, Claudia Klüppelberg, Gero Friesecke

J. Chem. Phys. 162, 144109 (2025)

https://doi.org/10.1063/5.0261810

Published: April 2025

View articletitled, Copula methods for modeling pair densities in density functional theory

Journal Articles

Dimerization of model polymer chains under nonequilibrium conditions

Sangita Mondal, Ved Mahajan, Biman Bagchi

J. Chem. Phys. 162, 124904 (2025)

https://doi.org/10.1063/5.0249314

Published: March 2025

View articletitled, Dimerization of model polymer chains under nonequilibrium conditions

Journal Articles

Memory, hysteresis, and kinetic cooperativity in stochastic mnemonic networks

Subham Pal, Manmath Panigrahy, R. Adhikari, Arti Dua

J. Chem. Phys. 162, 125102 (2025)

https://doi.org/10.1063/5.0252386

Published: March 2025

View articletitled, Memory, hysteresis, and kinetic cooperativity in stochastic mnemonic networks

Journal Articles

A comparison of probabilistic generative frameworks for molecular simulations

Richard John, Lukas Herron, Pratyush Tiwary

J. Chem. Phys. 162, 114121 (2025)

https://doi.org/10.1063/5.0249683

Published: March 2025

View articletitled, A comparison of probabilistic generative frameworks for molecular simulations

Journal Articles

The synergy between compartmentalization and motorization in chromatin architecture

Ronaldo J. Oliveira, Antonio B. Oliveira Junior, Vinícius G. Contessoto, José N. Onuchic

J. Chem. Phys. 162, 114116 (2025)

https://doi.org/10.1063/5.0239634

Published: March 2025

View articletitled, The synergy between compartmentalization and motorization in chromatin architecture

Journal Articles

Modeling the Kohn–Sham potential for molecular dissociation with orbital-independent functionals: A proof of principle

Sara Giarrusso, Federica Agostini

J. Chem. Phys. 162, 091103 (2025)

https://doi.org/10.1063/5.0243705

Published: March 2025

View articletitled, Modeling the Kohn–Sham potential for molecular dissociation with orbital-independent functionals: A proof of principle

Journal Articles

Prediction of induced fluxes in reverse nonequilibrium molecular dynamics

Tatsuma Oishi, Yusuke Koide, Takato Ishida, Yuichi Masubuchi, Takashi Uneyama

J. Chem. Phys. 162, 054120 (2025)

https://doi.org/10.1063/5.0236799

Published: February 2025

View articletitled, Prediction of induced fluxes in reverse nonequilibrium molecular dynamics

Journal Articles

Potential distribution theory of alchemical transfer

Solmaz Azimi, Emilio Gallicchio

J. Chem. Phys. 162, 054106 (2025)

https://doi.org/10.1063/5.0244918

Published: February 2025

View articletitled, Potential distribution theory of alchemical transfer

Journal Articles

Uncovering dissipation from coarse observables: A case study of a random walk with unobserved internal states

Oleg A. Igoshin, Anatoly B. Kolomeisky, Dmitrii E. Makarov

J. Chem. Phys. 162, 034111 (2025)

https://doi.org/10.1063/5.0247331

Published: January 2025

View articletitled, Uncovering dissipation from coarse observables: A case study of a random walk with unobserved internal states

Journal Articles

Pair approximating the action for molecular rotations in path integral Monte Carlo

Muhammad Shaeer Moeed, Tobias Serwatka, Pierre-Nicholas Roy

J. Chem. Phys. 162, 024113 (2025)

https://doi.org/10.1063/5.0246327

Published: January 2025

View articletitled, Pair approximating the action for molecular rotations in path integral Monte Carlo

Journal Articles

Exceptionally large fluctuations in orientational order: The lessons of large-deviation theory for liquid crystalline systems

Eleftherios Mainas, Richard M. Stratt

J. Chem. Phys. 162, 024501 (2025)

https://doi.org/10.1063/5.0238056

Published: January 2025

View articletitled, Exceptionally large fluctuations in orientational order: The lessons of large-deviation theory for liquid crystalline systems

Journal Articles

Trajectory analysis of anomalous dynamics in optical lattice

Zhenbo Ni, Yonggang Peng, Yujun Zheng

J. Chem. Phys. 162, 014302 (2025)

https://doi.org/10.1063/5.0246963

Published: January 2025

View articletitled, Trajectory analysis of anomalous dynamics in optical lattice

Journal Articles

Uncovering the lung cancer mechanisms through the chromosome structural ensemble characteristics and nucleation seeds

Wen-Ting Chu, Jin Wang

J. Chem. Phys. 161, 225101 (2024)

https://doi.org/10.1063/5.0238929

Published: December 2024

View articletitled, Uncovering the lung cancer mechanisms through the chromosome structural ensemble characteristics and nucleation seeds

Journal Articles

From high-dimensional committors to reactive insights

Nils E. Strand, Schuyler B. Nicholson, Hadrien Vroylandt, Todd R. Gingrich

J. Chem. Phys. 161, 224109 (2024)

https://doi.org/10.1063/5.0232705

Published: December 2024

View articletitled, From high-dimensional committors to reactive insights

Journal Articles

Microstructural characterization of DEM-based random packings of monodisperse and polydisperse non-convex particles

Zhihong Ma, Mingkun Jia, Jiaping Liu, Wenxiang Xu

J. Chem. Phys. 161, 184104 (2024)

https://doi.org/10.1063/5.0233933

Published: November 2024

View articletitled, Microstructural characterization of DEM-based random packings of monodisperse and polydisperse non-convex particles

Journal Articles

Extrinsic fluctuations in the p53 cycle

Manuel Eduardo Hernández-García, Mariana Gómez-Schiavon, Jorge Velázquez-Castro

J. Chem. Phys. 161, 184103 (2024)

https://doi.org/10.1063/5.0227728

Published: November 2024

View articletitled, Extrinsic fluctuations in the p53 cycle

Journal Articles

Inferring the existence of hydrogen bonds directly from statistical analysis of molecular dynamics trajectories

Valerii Chuiko, Paul W. Ayers

J. Chem. Phys. 161, 174116 (2024)

https://doi.org/10.1063/5.0231711

Published: November 2024

View articletitled, Inferring the existence of hydrogen bonds directly from statistical analysis of molecular dynamics trajectories

Journal Articles

A modified variational approach to noisy cell signaling

Ruobing Cai, Yueheng Lan

J. Chem. Phys. 161, 165103 (2024)

https://doi.org/10.1063/5.0231660

Published: October 2024

View articletitled, A modified variational approach to noisy cell signaling

Journal Articles

Double Mpemba effect in the cooling of trapped colloids

Isha Malhotra, Hartmut Löwen

J. Chem. Phys. 161, 164903 (2024)

https://doi.org/10.1063/5.0225749

Published: October 2024

View articletitled, Double Mpemba effect in the cooling of trapped colloids

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Probing exciton diffusion dynamics in photosynthetic supercomplexes via exciton–exciton annihilation

Copula methods for modeling pair densities in density functional theory

Dimerization of model polymer chains under nonequilibrium conditions

Memory, hysteresis, and kinetic cooperativity in stochastic mnemonic networks

A comparison of probabilistic generative frameworks for molecular simulations

The synergy between compartmentalization and motorization in chromatin architecture

Modeling the Kohn–Sham potential for molecular dissociation with orbital-independent functionals: A proof of principle

Prediction of induced fluxes in reverse nonequilibrium molecular dynamics

Potential distribution theory of alchemical transfer

Uncovering dissipation from coarse observables: A case study of a random walk with unobserved internal states

Pair approximating the action for molecular rotations in path integral Monte Carlo

Exceptionally large fluctuations in orientational order: The lessons of large-deviation theory for liquid crystalline systems

Trajectory analysis of anomalous dynamics in optical lattice

Uncovering the lung cancer mechanisms through the chromosome structural ensemble characteristics and nucleation seeds

From high-dimensional committors to reactive insights

Microstructural characterization of DEM-based random packings of monodisperse and polydisperse non-convex particles

Extrinsic fluctuations in the p53 cycle

Inferring the existence of hydrogen bonds directly from statistical analysis of molecular dynamics trajectories

A modified variational approach to noisy cell signaling

Double Mpemba effect in the cooling of trapped colloids

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