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Journal Articles

Phase transitions in chromatin: Mesoscopic and mean-field approaches

R. Tiani, M. Jardat, V. Dahirel
Journal: The Journal of Chemical Physics
J. Chem. Phys. 162, 024902 (2025)
https://doi.org/10.1063/5.0236019
Published: January 2025
View article titled, Phase transitions in chromatin: Mesoscopic and mean-field approaches
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Journal Articles

Mean lifetime of diffusing particle in cylindrical cavity with absorbing spots of arbitrary radii on its bases

Leonardo Dagdug, Ivan Pompa-García, Vladimir Yu. Zitserman
Journal: The Journal of Chemical Physics
J. Chem. Phys. 162, 014102 (2025)
https://doi.org/10.1063/5.0242191
Published: January 2025
View article titled, Mean lifetime of diffusing particle in cylindrical cavity with absorbing spots of arbitrary radii on its bases
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Journal Articles

How to define temperature in active systems?

Lukas Hecht, Lorenzo Caprini, Hartmut Löwen, Benno Liebchen
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 224904 (2024)
https://doi.org/10.1063/5.0234370
Published: December 2024
View article titled, How to define temperature in active systems?
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Journal Articles

Enzyme kinetics simulation at the scale of individual particles

Taylor Kearney, Mark B. Flegg
Journal: The Journal of Chemical Physics
J. Chem. Phys. 161, 194111 (2024)
https://doi.org/10.1063/5.0216285
Published: November 2024
View article titled, Enzyme kinetics simulation at the scale of individual particles
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Journal Articles

Design of a Brownian ratchet based on repetitive aggregation and dispersion of stimuli-responsive molecules

Gayoung Kim, Jun Soo Kim
Journal: The Journal of Chemical Physics
J. Chem. Phys. 160, 064908 (2024)
https://doi.org/10.1063/5.0190589
Published: February 2024
View article titled, Design of a Brownian ratchet based on repetitive aggregation and dispersion of stimuli-responsive molecules
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Includes: Supplementary data
Journal Articles

Diffusion coefficients of linear trimer particles

Anton Lüders, Bastian Heß, Peter Nielaba
Journal: The Journal of Chemical Physics
J. Chem. Phys. 159, 054901 (2023)
https://doi.org/10.1063/5.0158286
Published: August 2023
View article titled, Diffusion coefficients of linear trimer particles
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Includes: Supplementary data
Journal Articles

Membrane shape deformation induced by curvature-inducing proteins consisting of chiral crescent binding and intrinsically disordered domains

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Hiroshi Noguchi
Journal: The Journal of Chemical Physics
J. Chem. Phys. 157, 034901 (2022)
https://doi.org/10.1063/5.0098249
Published: July 2022
View article titled, Membrane shape deformation induced by curvature-inducing proteins consisting of chiral crescent binding and intrinsically disordered domains
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Includes: Supplementary data
Journal Articles

Modeling colloidal interactions that predict equilibrium and non-equilibrium states

Brian K. Ryu, Scott M. Fenton, Tuan T. D. Nguyen, Matthew E. Helgeson, Roseanna N. Zia
Journal: The Journal of Chemical Physics
J. Chem. Phys. 156, 224101 (2022)
https://doi.org/10.1063/5.0086650
Published: June 2022
View article titled, Modeling colloidal interactions that predict equilibrium and non-equilibrium states
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Includes: Supplementary data
Journal Articles

Two step micro-rheological behavior in a viscoelastic fluid

Rohit Jain, Félix Ginot, Johannes Berner, Clemens Bechinger, Matthias Krüger
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 184904 (2021)
https://doi.org/10.1063/5.0048320
Published: May 2021
View article titled, Two step micro-rheological behavior in a viscoelastic fluid
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Journal Articles

Space–time histories approach to fast stochastic simulation of bimolecular reactions

Thorsten Prüstel, Martin Meier-Schellersheim
Journal: The Journal of Chemical Physics
J. Chem. Phys. 154, 164111 (2021)
https://doi.org/10.1063/5.0037266
Published: April 2021
View article titled, Space–time histories approach to fast stochastic simulation of bimolecular reactions
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Journal Articles

Systematic errors in diffusion coefficients from long-time molecular dynamics simulations at constant pressure

Sören von Bülow, Jakob Tómas Bullerjahn, Gerhard Hummer
Journal: The Journal of Chemical Physics
J. Chem. Phys. 153, 021101 (2020)
https://doi.org/10.1063/5.0008316
Published: July 2020
View article titled, Systematic errors in diffusion coefficients from long-time molecular dynamics simulations at constant pressure
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Includes: Supplementary data
Journal Articles

Pair-distribution function of active Brownian spheres in two spatial dimensions: Simulation results and analytic representation

Julian Jeggle, Joakim Stenhammar, Raphael Wittkowski
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 194903 (2020)
https://doi.org/10.1063/1.5140725
Published: May 2020
View article titled, Pair-distribution function of active Brownian spheres in two spatial dimensions: Simulation results and analytic representation
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Includes: Supplementary data
Journal Articles

Rectification and separation of mixtures of active and passive particles driven by temperature difference

Wei-jing Zhu, Teng-Chao Li, Wei-rong Zhong, Bao-quan Ai
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 184903 (2020)
https://doi.org/10.1063/5.0005013
Published: May 2020
View article titled, Rectification and separation of mixtures of active and passive particles driven by temperature difference
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Journal Articles

Non-Markov bond model for dynamic force spectroscopy

Jakob Tómas Bullerjahn, Sebastian Sturm, Klaus Kroy
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 064104 (2020)
https://doi.org/10.1063/1.5134742
Published: February 2020
View article titled, Non-Markov bond model for dynamic force spectroscopy
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Journal Articles

Spatially varying colloidal phase behavior on multi-dimensional energy landscapes

Jianli Zhang, Yuanxing Zhang, Michael A. Bevan
Journal: The Journal of Chemical Physics
J. Chem. Phys. 152, 054905 (2020)
https://doi.org/10.1063/1.5142609
Published: February 2020
View article titled, Spatially varying colloidal phase behavior on multi-dimensional energy landscapes
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Journal Articles

Diffusion of interacting particles in a channel with reflection boundary conditions

Narender Khatri, P. S. Burada
Journal: The Journal of Chemical Physics
J. Chem. Phys. 151, 094103 (2019)
https://doi.org/10.1063/1.5116330
Published: September 2019
View article titled, Diffusion of interacting particles in a channel with reflection boundary conditions
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Journal Articles

A versatile simulation method for studying phase behavior and dynamics in colloidal rod and rod-polymer suspensions

Yawei Liu, Asaph Widmer-Cooper
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 244508 (2019)
https://doi.org/10.1063/1.5096193
Published: June 2019
View article titled, A versatile simulation method for studying phase behavior and dynamics in colloidal rod and rod-polymer suspensions
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Journal Articles

Interparticle torques suppress motility-induced phase separation for rodlike particles

Robin van Damme, Jeroen Rodenburg, René van Roij, Marjolein Dijkstra
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 164501 (2019)
https://doi.org/10.1063/1.5086733
Published: April 2019
View article titled, Interparticle torques suppress motility-induced phase separation for rodlike particles
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Includes: Supplementary data
Journal Articles

Response of active Brownian particles to shear flow

Kiryl Asheichyk, Alexandre P. Solon, Christian M. Rohwer, Matthias Krüger
Journal: The Journal of Chemical Physics
J. Chem. Phys. 150, 144111 (2019)
https://doi.org/10.1063/1.5086495
Published: April 2019
View article titled, Response of active Brownian particles to shear flow
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Journal Articles

Transport of particles driven by the traveling obstacle arrays

Wei-jing Zhu, Wei-rong Zhong, Jian-wen Xiong, Bao-quan Ai
Journal: The Journal of Chemical Physics
J. Chem. Phys. 149, 174906 (2018)
https://doi.org/10.1063/1.5049719
Published: November 2018
View article titled, Transport of particles driven by the traveling obstacle arrays
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