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Journal Articles

Chaos in gene regulatory networks: Effects of time delays and interaction structure

Dilan Öztürk, Fatihcan M. Atay, Hitay Özbay

Chaos 34, 033102 (2024)

https://doi.org/10.1063/5.0172767

Published: March 2024

View article titled, Chaos in gene regulatory networks: Effects of time delays and interaction structure

Journal Articles

Parametric modeling of mechanical effects on circadian oscillators

Keith E. Kennedy, Juan F. Abenza, Leone Rossetti, Xavier Trepat, Pablo Villoslada, Jordi Garcia-Ojalvo

Chaos 34, 013135 (2024)

https://doi.org/10.1063/5.0164829

Published: January 2024

View article titled, Parametric modeling of mechanical effects on circadian oscillators

Includes: Supplementary data

Journal Articles

An improved approach for calculating energy landscape of gene networks from moment equations

Shirui Bian, Yunxin Zhang, Chunhe Li

Chaos 33, 023116 (2023)

https://doi.org/10.1063/5.0128345

Published: February 2023

View article titled, An improved approach for calculating energy landscape of gene networks from moment equations

Includes: Supplementary data

Journal Articles

Effect of time delay in a bistable synthetic gene network

Guanghui Cheng, Shutao Zheng, Jiahao Dong, Zhenqin Xu, Rong Gui

Chaos 31, 053105 (2021)

https://doi.org/10.1063/5.0046373

Published: May 2021

View article titled, Effect of time delay in a bistable synthetic gene network

Journal Articles

Two-fold singularities in nonsmooth dynamics—Higher dimensional analogs

Simon Webber, Mike R. Jeffrey

Chaos 30, 093142 (2020)

https://doi.org/10.1063/5.0002144

Published: September 2020

View article titled, Two-fold singularities in nonsmooth dynamics—Higher dimensional analogs

Journal Articles

Rise of nations: Why do empires expand and fall?

S. Vakulenko, D. A. Lyakhov, A. G. Weber, D. Lukichev, D. L. Michels

Chaos 30, 093108 (2020)

https://doi.org/10.1063/5.0004795

Published: September 2020

View article titled, Rise of nations: Why do empires expand and fall?

Journal Articles

Reconstructing directional causal networks with random forest: Causality meeting machine learning

Siyang Leng, Ziwei Xu, Huanfei Ma

Chaos 29, 093130 (2019)

https://doi.org/10.1063/1.5120778

Published: September 2019

View article titled, Reconstructing directional causal networks with random forest: Causality meeting machine learning

Journal Articles

Recurrence-based information processing in gene regulatory networks

Marçal Gabalda-Sagarra, Lucas B. Carey, Jordi Garcia-Ojalvo

Chaos 28, 106313 (2018)

https://doi.org/10.1063/1.5039861

Published: October 2018

View article titled, Recurrence-based information processing in gene regulatory networks

Journal Articles

A variational method for analyzing limit cycle oscillations in stochastic hybrid systems

Paul C. Bressloff, James MacLaurin

Chaos 28, 063105 (2018)

https://doi.org/10.1063/1.5027077

Published: June 2018

View article titled, A variational method for analyzing limit cycle oscillations in stochastic hybrid systems

Journal Articles

Information-based measures for logical stochastic resonance in a synthetic gene network under Lévy flight superdiffusion

Juan Wu, Yong Xu, Haiyan Wang, Jürgen Kurths

Chaos 27, 063105 (2017)

https://doi.org/10.1063/1.4984806

Published: June 2017

View article titled, Information-based measures for logical stochastic resonance in a synthetic gene network under Lévy flight superdiffusion

Journal Articles

Designing a stochastic genetic switch by coupling chaos and bistability

Xiang Zhao, Qi Ouyang, Hongli Wang

Chaos 25, 113112 (2015)

https://doi.org/10.1063/1.4936087

Published: November 2015

View article titled, Designing a stochastic genetic switch by coupling chaos and bistability

Journal Articles

Mobility and density induced amplitude death in metapopulation networks of coupled oscillators

Chuansheng Shen, Hanshuang Chen, Zhonghuai Hou

Chaos 24, 043125 (2014)

https://doi.org/10.1063/1.4901581

Published: November 2014

View article titled, Mobility and density induced amplitude death in metapopulation networks of coupled oscillators

Journal Articles

Introduction to Focus Issue: Quantitative Approaches to Genetic Networks

Réka Albert, James J. Collins, Leon Glass

Chaos 23, 025001 (2013)

https://doi.org/10.1063/1.4810923

Published: June 2013

View article titled, Introduction to Focus Issue: Quantitative Approaches to Genetic Networks

Journal Articles

Entrainment of noise-induced and limit cycle oscillators under weak noise

Namiko Mitarai, Uri Alon, Mogens H. Jensen

Chaos 23, 023125 (2013)

https://doi.org/10.1063/1.4808253

Published: June 2013

View article titled, Entrainment of noise-induced and limit cycle oscillators under weak noise

Journal Articles

Identifiability and inference of pathway motifs by epistasis analysis

Hilary Phenix, Theodore Perkins, Mads Kærn

Chaos 23, 025103 (2013)

https://doi.org/10.1063/1.4807483

Published: June 2013

View article titled, Identifiability and inference of pathway motifs by epistasis analysis

Journal Articles

Stabilizing gene regulatory networks through feedforward loops

C. Kadelka, D. Murrugarra, R. Laubenbacher

Chaos 23, 025107 (2013)

https://doi.org/10.1063/1.4808248

Published: June 2013

View article titled, Stabilizing gene regulatory networks through feedforward loops

Journal Articles

Sensitive dependence on initial conditions in gene networks

A. Machina, R. Edwards, P. van den Driessche

Chaos 23, 025101 (2013)

https://doi.org/10.1063/1.4807480

Published: June 2013

View article titled, Sensitive dependence on initial conditions in gene networks

Journal Articles

Lévy noise induced switch in the gene transcriptional regulatory system

Yong Xu, Jing Feng, JuanJuan Li, Huiqing Zhang

Chaos 23, 013110 (2013)

https://doi.org/10.1063/1.4775758

Published: January 2013

View article titled, Lévy noise induced switch in the gene transcriptional regulatory system

Journal Articles

“Quorum sensing” generated multistability and chaos in a synthetic genetic oscillator

I. Potapov, B. Zhurov, E. Volkov

Chaos 22, 023117 (2012)

https://doi.org/10.1063/1.4705085

Published: April 2012

View article titled, “Quorum sensing” generated multistability and chaos in a synthetic genetic oscillator

Journal Articles

Stochastic stability of genetic regulatory networks with a finite set delay characterization

Wenbing Zhang, Yang Tang, Jian-an Fang, Xiaotai Wu

Chaos 22, 023106 (2012)

https://doi.org/10.1063/1.3701994

Published: April 2012

View article titled, Stochastic stability of genetic regulatory networks with a finite set delay characterization

NARROW

Topics

Chaos in gene regulatory networks: Effects of time delays and interaction structure

Parametric modeling of mechanical effects on circadian oscillators

An improved approach for calculating energy landscape of gene networks from moment equations

Effect of time delay in a bistable synthetic gene network

Two-fold singularities in nonsmooth dynamics—Higher dimensional analogs

Rise of nations: Why do empires expand and fall?

Reconstructing directional causal networks with random forest: Causality meeting machine learning

Recurrence-based information processing in gene regulatory networks

A variational method for analyzing limit cycle oscillations in stochastic hybrid systems

Information-based measures for logical stochastic resonance in a synthetic gene network under Lévy flight superdiffusion

Designing a stochastic genetic switch by coupling chaos and bistability

Mobility and density induced amplitude death in metapopulation networks of coupled oscillators

Introduction to Focus Issue: Quantitative Approaches to Genetic Networks

Entrainment of noise-induced and limit cycle oscillators under weak noise

Identifiability and inference of pathway motifs by epistasis analysis

Stabilizing gene regulatory networks through feedforward loops

Sensitive dependence on initial conditions in gene networks

Lévy noise induced switch in the gene transcriptional regulatory system

“Quorum sensing” generated multistability and chaos in a synthetic genetic oscillator

Stochastic stability of genetic regulatory networks with a finite set delay characterization

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