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Book Chapter
Series: AIPP Books, Methods
Published: January 2023
10.1063/9780735425279_010
EISBN: 978-0-7354-2527-9
ISBN: 978-0-7354-2524-8
...Yik, A. K.-H., Qiu, Y., Unarta, I. C., Cao, S., and Huang, X., “A step-by-step guide on how to construct quasi-Markov state models to study functional conformational changes of biological macromolecules,” in A Practical Guide to Recent Advances in Multiscale Modeling and Simulation...
Book Chapter
Series: AIPP Books, Principles
Published: November 2022
10.1063/9780735425194_001
EISBN: 978-0-7354-2519-4
ISBN: 978-0-7354-2508-8
...Wang, H., Qian, G., Cao, W., and Lu, S., “A two-step online fault detection method for high-resistance connection faults in a vehicular BLDC motor,” in Advanced Sensors and Sensing Technologies for Electric Vehicles, edited by W. Cao and S. Lu (AIP Publishing, Melville, New York, 2022), pp...
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Schematic of an SBD with a single-<span class="search-highlight">step</span> field plate with length <em>L</em>...
Published: February 2023
FIG. 8.4 Schematic of an SBD with a single-step field plate with length LFP and height hFP connected to the Schottky electrode. The × and ∗ symbols indicate the positions of peak off-state electric fields, whose intensities are determined by both LFP and hFP. More about this image found in Schematic of an SBD with a single-step field plate with length L...
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(a)–(c) Binding affinity changes for <span class="search-highlight">step</span> I: mutating from gliadin peptides...
Published: January 2023
FIG. 11.4 (a)–(c) Binding affinity changes for step I: mutating from gliadin peptides to polyalanines and step II: mutating from polyalanines in the presence of glia-α1, glia-α2, and glia-ω1 respectively. Green bars represent ΔΔG for DQ2.5, red bars represent ΔΔG for DQ7.5 and purple bars represent the differences of ΔΔG from the DQ2.5 system to the DQ7.5 system. All error bars represent standard errors. (d) and (e) Changes of DQ2.5 and DQ7.5 contact surfaces with glia-α1, upon mutations from glia-α1 to polyalanines and then to ghost. The gliadin peptide is shown in a stick model. Contact residues at the binding groove of HLA are shown on the cyan surface. Reprinted with permission from Song et al., J. Phys. Chem. B 126 , 5151–5160 (2022). Copyright 2022 American Chemical Society. More about this image found in (a)–(c) Binding affinity changes for step I: mutating from gliadin peptides...
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Main <span class="search-highlight">steps</span> for the system setup of the SERCA pump embedded in a DMPC bilaye...
Published: January 2023
FIG. 3.2 Main steps for the system setup of the SERCA pump embedded in a DMPC bilayer. (1) Bilayer generation by phospholipid packing, (2) SERCA insertion and orientation by coordinate shifting, (3) removal of lipids in close contact with SERCA, (4) coarse-grain mapping, and (5) system solvation b... More about this image found in Main steps for the system setup of the SERCA pump embedded in a DMPC bilaye...
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(a) Schematic diagram of the main <span class="search-highlight">steps</span> to generate hybrid structures and t...
Published: January 2023
FIG. 11.2 (a) Schematic diagram of the main steps to generate hybrid structures and topologies. A mutation is introduced into the protein, a topology with a hybrid residue is generated, and the B-state parameters are added to the topology file. (b) Illustration of hybrid residue side chains of Trp... More about this image found in (a) Schematic diagram of the main steps to generate hybrid structures and t...
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Schematic of (a) basic parallel plate electrostatic actuator ( Errando-Herr...
Published: March 2023
FIG. 7.7 Schematic of (a) basic parallel plate electrostatic actuator ( Errando-Herranz et al., 2020 ) and (b) a comb drive for linear motion. Schematic of (c) a basic scratch drive actuator (SDA) ( Akiyama and Fujita, 1995 ). Step by step crawling motion of the actuator under pulse voltage input. (d) Pressing down of plate with rising voltage pushing the bushing forward. (e) Releasing of the SDA by falling voltage resulting in pulling the plate to right while pinning down the bush due to its shape. (f) Negative rise of voltage resulting in another pressing down of the beam resulting in the bushing moving to the left resulting in net rightward motion of the plate from the starting point. This process repeats for each half cycle. More about this image found in Schematic of (a) basic parallel plate electrostatic actuator ( Errando-Herr...
Book Chapter
Series: AIPP Books, Methods
Published: March 2023
10.1063/9780735425743_009
EISBN: 978-0-7354-2574-3
ISBN: 978-0-7354-2572-9
... x at the time step k is denoted by x ^ k . A predicted variable is denoted with ⋅ ~ , i.e., the predicted variable x at the time step k is denoted by x ~ k . The notation xk|k−1 for k ∈ Z...
Book Chapter
Series: AIPP Books, Methods
Published: March 2023
10.1063/9780735425743_010
EISBN: 978-0-7354-2574-3
ISBN: 978-0-7354-2572-9
... inputs at time t, respectively, and f represents the underlying dynamics expressed as functions. These governing functions are to be identified from the historical data using SINDy. As a first step, the time-series data for process states and inputs are collected, and the derivatives...
Book Chapter
Series: AIPP Books, Methods
Published: March 2023
10.1063/9780735425743_004
EISBN: 978-0-7354-2574-3
ISBN: 978-0-7354-2572-9
...-time change in the weight of a small adsorbent particle in the presence of a step change in CO2 partial pressure. The latter measures the step response of CO2 concentration output, which yields the breakthrough curve. It not only provides the maximum loading of the adsorptive...
Book Chapter
Series: AIPP Books, Methods
Published: March 2023
10.1063/9780735425743_008
EISBN: 978-0-7354-2574-3
ISBN: 978-0-7354-2572-9
... simulation test. FIG. 8.1 Selected pipe geometry. FIG. 8.2 Steady-state temperature profile in the pipe. FIG. 8.3 Temperature variations at different positions in the pipe after step-change in the inlet temperature. To check whether the simulation results are independent of the underlying mesh...