The growing interest in generating electrical power from tidal currents using tidal turbine generators raises a number of environmental concerns, including the risk that marine mammals might be injured or killed through collision with rotating turbine blades. To understand this risk, information on how marine mammals use tidal rapid habitats and in particular, their underwater movements and dive behaviour is required. Porpoises, which are the most abundant small cetacean at most European tidal sites, are difficult animals to tag, and the limited size of tidal habitats means that any telemetered animal would be likely to spend only a small proportion of time within them. Here, an alternative approach is explored, whereby passive acoustic monitoring (PAM) is used to obtain fine scale geo-referenced tracks of harbour porpoises in tidal rapid areas. Large aperture hydrophone arrays are required to obtain accurate locations of animals from PAM data and automated algorithms are necessary to process the large quantities of acoustic data collected on such systems during a typical survey. Methods to automate localisation, including a method to match porpoise detections on different hydrophones and separate different vocalising animals, and an assessment of the localisation accuracy of the large aperture hydrophone array are presented.

1.
Ainslie
,
M. A.
, and
Mccolm
,
J. G.
(
1998
). “
A simplified formula for viscous and chemical absorption in sea water
,”
J. Acoust. Soc. Am.
103
(
3
),
1671
1672
.
3.
Au
,
W. W. L.
, and
Hastings
,
M. C.
(
2008
). “
Signal recording and data acquisition
,” in
Principles of Marine Bioacoustics
(
Springer
,
New York
), Chap. 5, pp.
155
168
.
4.
Au
,
W. W. L.
,
Kastelein
,
R. A.
,
Rippe
,
T.
, and
Schooneman
,
N. M.
(
1999
). “
Transmission beam pattern and echolocation signals of a harbor porpoise (Phocoena phocoena)
,”
J. Acoust. Soc. Am.
106
(
6
),
3699
3705
.
5.
Bassett
,
C.
,
Thomson
,
J.
, and
Polagye
,
B.
(
2013
). “
Sediment-generated noise and bed stress in a tidal channel
,”
J. Geophys. Res. Oceans
118
(
4
),
2249
2265
.
6.
Benjamins
,
S.
,
Dale
,
A.
,
Hastie
,
G.
,
Waggitt
,
J.
,
Lea
,
M.-A.
,
Scott
,
B.
, and
Wilson
,
B.
(
2015
). “
Confusion reigns? A review of marine megafauna interactions with tidal-stream environments
,”
Oceanogr. Mar. Biol.
53
,
1
54
.
7.
Berclaz
,
J.
,
Fleuret
,
F.
,
Türetken
,
E.
, and
Fua
,
P.
(
2011
). “
Multiple object tracking using k-shortest paths optimization
,”
IEEE Trans. Pattern Analysis Machine Intell.
33
(
9
),
1806
1819
.
8.
Butterworth
,
S.
(
1930
). “
On the theory of filter amplifiers
,”
Exp. Wireless Wireless Eng.
7
,
536
541
.
9.
Chib
,
S.
, and
Greenberg
,
E.
(
1995
). “
Understanding the Metropolis-Hastings algorithm
,”
Am. Stat.
49
(
4
),
327
335
.
10.
Deruiter
,
S. L.
,
Bahr
,
A.
,
Blanchet
,
M.-A.
,
Hansen
,
S. F.
,
Kristensen
,
J. H.
,
Madsen
,
P. T.
,
Tyack
,
P. L.
, and
Wahlberg
,
M.
(
2009
). “
Acoustic behaviour of echolocating porpoises during prey capture
,”
J. Exp. Biol.
212
(
19
),
3100
3107
.
11.
Duncan
,
A. J.
, and
Maggi
,
A. L.
(
2006
). “
A consistent, user friendly interface for running a variety of underwater acoustic propagation codes
,” in
Proceedings of the First Australasian Acoustical Societies' Conference
,
Christchurch, New Zealand
, pp.
471
477
.
12.
European Commission
(
1992
). “
Council Directive 92/43/EEC of 21 May 1992 on the conservation of natural habitats and of wild fauna and flora
,” OJ L 206, pp.
7
50
, available at http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX:31992L0043 (Last viewed January 2017).
13.
Frid
,
C.
,
Andonegi
,
E.
,
Depestele
,
J.
,
Judd
,
A.
,
Rihan
,
D.
,
Rogers
,
S. I.
, and
Kenchington
,
E.
(
2012
). “
The environmental interactions of tidal and wave energy generation devices
,”
Environ. Impact Assess. Rev.
32
(
1
),
133
139
.
14.
Gillespie
,
D.
,
Gordon
,
J.
,
Mchugh
,
R.
,
Mclaren
,
D.
,
Mellinger
,
D.
,
Redmond
,
P.
,
Thode
,
A.
,
Trinder
,
P.
, and
Deng
,
X. Y.
(
2009
). “
PAMGUARD: Semiautomated, open source software for real-time acoustic detection and localisation of cetaceans
,”
J. Acoust. Soc. Am.
125
,
2547
.
15.
Goodwin
,
L.
(
2008
). “
Diurnal and tidal variations in habitat use of the harbour porpoise (Phocoena phocoena) in Southwest Britain
,”
Aquat. Mamm.
34
(
1
),
44
53
.
16.
Gordon
,
J.
,
Thompson
,
D.
,
Leaper
,
R.
,
Gillespie
,
D.
,
Pierpoint
,
C.
,
Calderan
,
S.
,
Macaulay
,
J.
,
Gordon
,
T.
, and
Simpson
,
N.
(
2011
). “
Assessment of risk to marine mammals from underwater marine renewable devices in Welsh waters - Phase 2 - Studies of marine mammals in Welsh high tidal waters
,” Welsh Assembly Government, Cardiff, Wales.
17.
Hammond
,
P. S.
,
Macleod
,
K.
,
Berggren
,
P.
,
Borchers
,
D. L.
,
Burt
,
L.
,
Cañadas
,
A.
,
Desportes
,
G.
,
Donovan
,
G. P.
,
Gilles
,
A.
,
Gillespie
,
D.
,
Gordon
,
J.
,
Hiby
,
L.
,
Kuklik
,
I.
,
Leaper
,
R.
,
Lehnert
,
K.
,
Leopold
,
M.
,
Lovell
,
P.
,
Oien
,
N.
,
Paxton
,
C. G. M.
,
Ridoux
,
V.
,
Rogan
,
E.
,
Samarra
,
F.
,
Scheidat
,
M.
,
Sequeira
,
M.
,
Siebert
,
U.
,
Skov
,
H.
,
Swift
,
R.
,
Tasker
,
M. L.
, and
Teilmann
,
J.
(
2013
). “
Cetacean abundance and distribution in European Atlantic shelf waters to inform conservation and management
,”
Biol. Conser.
164
,
107
122
.
18.
Hastie
,
G. D.
,
Wilson
,
B.
, and
Thompson
,
P. M.
(
2006
). “
Diving deep in a foraging hotspot: Acoustic insights into bottlenose dolphin dive depths and feeding behaviour
,”
Mar. Biol.
148
(
5
),
1181
1188
.
19.
Heerfordt
,
A.
,
Møhl
,
B.
, and
Wahlberg
,
M.
(
2007
). “
A wideband connection to sperm whales: A fiber-optic, deep-sea hydrophone array
,”
Deep Sea Res. Part I
54
(
3
),
428
436
.
20.
Holt
,
M. M.
,
Noren
,
D. P.
,
Veirs
,
V.
,
Emmons
,
C. K.
, and
Veirs
,
S.
(
2009
). “
Speaking up: Killer whales (Orcinus orca) increase their call amplitude in response to vessel noise
,”
J. Acoust. Soc. Am.
125
,
EL27
L32
.
21.
Kalman
,
R. E.
(
1960
). “
A new approach to linear filtering and prediction problems
,”
Trans. ASME J. Basic Eng.
82
,
35
45
.
22.
Koblitz
,
J. C.
,
Wahlberg
,
M.
,
Stilz
,
P.
,
Madsen
,
P. T.
,
Beedholm
,
K.
, and
Schnitzler
,
H.-U.
(
2012
). “
Asymmetry and dynamics of a narrow sonar beam in an echolocating harbor porpoise
,”
J. Acoust. Soc. Am.
131
(
3
),
2315
2324
.
23.
Kuhn
,
H. W.
(
1955
). “
The Hungarian method for the assignment problem
,”
Naval Res. Logistics Quart.
2
(
1-2
),
83
97
.
24.
Kyhn
,
L. A.
,
Tougaard
,
J.
,
Beedholm
,
K.
,
Jensen
,
F. H.
,
Ashe
,
E.
,
Williams
,
R.
, and
Madsen
,
P. T.
(
2013
). “
Clicking in a killer whale habitat: Narrow-band, high-frequency biosonar clicks of harbour porpoise (Phocoena phocoena) and Dall's Porpoise (Phocoenoides dalli)
,”
PLoS ONE
8
(
5
),
e63763
.
25.
Linnenschmidt
,
M.
,
Teilmann
,
J.
,
Akamatsu
,
T.
,
Dietz
,
R.
, and
Miller
,
L. A.
(
2013
). “
Biosonar, dive, and foraging activity of satellite tracked harbor porpoises (Phocoena phocoena)
,”
Mar. Mamm. Sci.
29
(
2
),
E77
E97
.
26.
Luetteke
,
F.
,
Zhang
,
X.
, and
Franke
,
J.
(
2012
). “
Implementation of the Hungarian Method for object tracking on a camera monitored transportation system
,” in
7th German Conference on Robotics
, pp.
1
6
.
27.
MacQueen
,
J. B.
(
1967
). “
Kmeans some methods for classification and analysis of multivariate observations
,” in
5th Berkeley Symposium on Mathematical Statistics and Probability
, Vol.
1
, No.
233
, pp.
281
297
.
28.
Malinka
,
C. E.
,
Hay
,
A. E.
, and
Cheel
,
R.
(
2015
). “
Towards acoustic monitoring of marine mammals at a tidal energy site: Grand Passage, NS, Canada
,” in
Proceedings of the 11th European Wave and Tidal Energy Conference
, pp.
1
10
.
29.
Marubini
,
F.
,
Gimona
,
A.
,
Evans
,
P. G. H.
,
Wright
,
P. J.
, and
Pierce
,
G. J.
(
2009
). “
Habitat preferences and interannual variability in occurrence of the harbour porpoise phocoena phocoena off northwest Scotland
,”
Mar. Ecol. Prog. Ser.
381
,
297
310
.
30.
Metropolis
,
N.
,
Rosenbluth
,
A. W.
,
Rosenbluth
,
M. N.
,
Teller
,
A. H.
, and
Teller
,
E.
(
1953
). “
Equation of state calculations by fast computing machines
,”
J. Chem. Phys.
21
(
6
),
1087
1092
.
31.
Miller
,
B.
, and
Dawson
,
S.
(
2009
). “
A large-aperture low-cost hydrophone array for tracking whales from small boats
,”
J. Acoust. Soc. Am.
126
(
5
),
2248
2256
.
2.
MMPA
(
1972
). Marine Mammal Protection Act of 1972. 16 U.S.C. et seq. and 50 CFR Part 216.
52.
Mohl
,
B.
, and
Andersen
,
S.
(
1973
). “
Echolocation: high-frequency component in the click of the Harbour Porpoise (Phocoena ph. L.)
,”
J. Acoust. Soc. Am.
54
(
5
),
1368
1372
.
32.
Møhl
,
B.
,
Wahlberg
,
M.
,
Madsen
,
P. T.
,
Miller
,
L. A.
, and
Surlykke
,
A.
(
2000
). “
Sperm whale clicks: Directionality and source level revisited
,”
J. Acoust. Soc. Am.
107
(
1
),
638
648
.
33.
Nelder
,
J. A.
, and
Mead
,
R.
(
1965
). “
A simplex method for function minimization
,”
Comput. J.
7
(
4
),
308
313
.
34.
Pierpoint
,
C.
(
2008
). “
Harbour porpoise (Phocoena phocoena) foraging strategy at a high energy, near-shore site in south-west Wales, UK
,”
J. Mar. Biol. Assoc. U. K.
88
(
6
),
1167
1173
.
35.
Press
,
W. H.
,
Teukolsky
,
S. A.
,
Vetterling
,
W. T.
, and
Flannery
,
B. P.
(
1988
). “
Minimization or maximization of functions
,” in
Numerical Recipes: The Art of Scientific Computing
, 2nd ed. (
Cambridge University Press
,
New York
), Chap. 10, pp.
408
412
.
36.
Teilmann
,
J.
,
Tougaard
,
J.
,
Miller
,
L. A.
,
Kirketerp
,
T.
,
Hansen
,
K.
, and
Brando
,
S.
(
2006
). “
Reactions of captive harbor porpoises (Phocoena phocoena) to pinger-like sounds
,”
Mar. Mamm. Sci.
22
(
2
),
240
260
.
37.
Thode
,
A.
(
2005
). “
Three-dimensional passive acoustic tracking of sperm whales (Physeter macrocephalus) in ray-refracting environments
,”
J. Acoust. Soc. Am.
118
(
6
),
3575
3584
.
38.
Thompson
,
D.
, and
Lonergan
,
M.
(
2015
). “
Collision risk and impact Study: Examination of models for estimating the risk of collisions between seals and tidal turbines
,” Report MR 7.2.2, Sea Mammal Research Unit, University of St Andrews, St Andrews, UK.
39.
Toke
,
D.
(
2011
). “
The UK offshore wind power programme: A sea-change in UK energy policy?
,”
Energy Policy
39
(
2
),
526
534
.
40.
Ural
,
T.
,
Bahli
,
R.
,
Yano
,
M.
,
Inoue
,
T.
,
Sakamaki
,
T.
, and
Fukuchi
,
T.
(
2006
). “
Results from a high-resolution acoustic device for monitoring finless porpoises in coastal precincts off Japan
,” in
OCEANS 2006 - Asia Pacific
, pp.
1
5
.
41.
Verfuß
,
U. K.
,
Miller
,
L. A.
,
Pilz
,
P. K. D.
, and
Schnitzler
,
H.-U.
(
2009
). “
Echolocation by two foraging harbour porpoises (Phocoena phocoena)
,”
J. Exp. Biol.
212
,
823
834
.
42.
Villadsgaard
,
A.
,
Wahlberg
,
M.
, and
Tougaard
,
J.
(
2007
). “
Echolocation signals of wild harbour porpoises, Phocoena phocoena
,”
J. Exp. Biol.
210
(
1
),
56
64
.
43.
Wahlberg
,
M.
,
Møhl
,
B.
, and
Madsen
,
P. T.
(
2001
). “
Estimating source position accuracy of a large-aperture hydrophone array for bioacoustics
,”
J. Acoust. Soc. Am.
109
(
1
),
397
406
.
44.
Waring
,
G. T.
,
Josephson
,
E.
, and
Maze-foley
,
K.
(
2015
). “
US Atlantic and Gulf of Mexico Marine Mammal Stock Assessments – 2014
,” NOAA Tech Memo NMFS NE 231,
36
p.
45.
Watkins
,
W. a.
, and
Schevill
,
W. E.
(
1972
). “
Sound source location by arrival-times on a non-rigid three-dimensional hydrophone array
,”
Deep Sea Res. Oceanogr. Abstr.
19
(
10
),
691
706
.
46.
Wiggins
,
S. M.
,
McDonald
,
M. A.
, and
Hildebrand
,
J. A.
(
2012
). “
Beaked whale and dolphin tracking using a multichannel autonomous acoustic recorder
,”
J. Acoust. Soc. Am.
131
(
1
),
156
163
.
47.
Wilson
,
B.
,
Batty
,
R. S.
,
Daunt
,
F.
, and
Carter
,
C.
(
2007
). “
Collision risks between marine renewable energy devices and mammals, fish and diving birds
,” Report PA37 1QA, Scottish Association for Marine Science, Oban, Scotland.
48.
Wisniewska
,
D. M. M.
,
Johnson
,
M.
,
Teilmann
,
J.
,
Rojano-Doñate
,
L.
,
Shearer
,
J.
,
Sveegaard
,
S.
,
Miller
,
L. A. A.
,
Siebert
,
U.
, and
Madsen
,
P. T. T.
(
2016
). “
Ultra-high foraging rates of harbor porpoises make them vulnerable to anthropogenic disturbance
,”
Curr. Biol.
26
(
11
),
1441
1446
.
49.
Wisniewska
,
D. M.
,
Ratcliffe
,
J. M.
,
Beedholm
,
K.
,
Christensen
,
C. B.
,
Johnson
,
M.
,
Koblitz
,
J. C.
,
Wahlberg
,
M.
, and
Madsen
,
P. T.
(
2015
). “
Range-dependent flexibility in the acoustic field of view of echolocating porpoises (Phocoena phocoena)
,”
eLife
4
,
e05651
.
50.
Yussiff
,
A.-L.
,
Yong
,
S.-P.
, and
Baharudin
,
B. B.
(
2014
). “
Parallel Kalman filter-based multi-human tracking in surveillance video
,” in
2014 International Conference on Computer and Information Sciences (ICCOINS)
, pp.
1
6
.
51.
Zimmer
,
W.
(
2011
).
Passive Acoustic Monitoring of Cetaceans
(
Cambridge University Press
,
Cambridge, UK
),
356
pp.

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