Passive acoustic monitoring is a promising approach for monitoring long-term trends in harbor porpoise (Phocoena phocoena) abundance. Before passive acoustic monitoring can be implemented to estimate harbor porpoise abundance, information about the detectability of harbor porpoise is needed to convert recorded numbers of echolocation clicks to harbor porpoise densities. In the present study, paired data from a grid of nine passive acoustic click detectors (C-PODs, Chelonia Ltd., United Kingdom) and three days of simultaneous aerial line-transect visual surveys were collected over a 370 km2 study area. The focus of the study was estimating the effective detection area of the passive acoustic sensors, which was defined as the product of the sound production rate of individual animals and the area within which those sounds are detected by the passive acoustic sensors. Visually estimated porpoise densities were used as informative priors in a Bayesian model to solve for the effective detection area for individual harbor porpoises. This model-based approach resulted in a posterior distribution of the effective detection area of individual harbor porpoises consistent with previously published values. This technique is a viable alternative for estimating the effective detection area of passive acoustic sensors when other experimental approaches are not feasible.

1.
Akamatsu
,
T.
,
Teilmann
,
J.
,
Miller
,
L. A.
,
Tougaard
,
J.
,
Dietz
,
R.
,
Wang
,
D.
,
Wang
,
K. X.
,
Siebert
,
U.
, and
Naito
,
Y.
(
2007
). “
Comparison of echolocation behaviour between coastal and riverine porpoises
,”
Deep Sea Res. Part II
54
,
290
297
.
2.
Anderson
,
D.
(
2014
). “
Harbor porpoise return to the South Puget Sound: Using bioacoustic methods to monitor a recovering population
,” MS thesis,
Evergreen State College
,
Olympia, WA
.
3.
Au
,
W.
,
Kastelein
,
R.
,
Rippe
,
T.
, and
Schooneman
,
N.
(
1999
). “
Transmission beam pattern and echolocation signals of a harbor porpoise (Phocoena phocoena)
,”
J. Acoust. Soc. Am.
106
,
3699
3705
.
4.
Bailey
,
H.
,
Clay
,
G.
,
Coates
,
E. A.
,
Lusseau
,
D.
,
Senior
,
B.
, and
Thompson
,
P. M.
(
2010
). “
Using T-PODs to assess variations in the occurrence of coastal bottlenose dolphins and harbour porpoises
,”
Aquatic Conserv: Mar. Freshw. Ecosyst.
20
,
150
158
.
4.
Barlow
,
J.
(
1988
). “
Harbor porpoise, Phocoena phocoena, abundance estimation for California, Oregon, and Washington: I. Ship surveys
,”
Fish. Bull.
86
,
417
432
.
5.
Barlow
,
J.
, and
Forney
,
K. A.
(
1994
). “
An assessment of the 1994 status of harbor porpoise in California
,” U.S. Dept. of Commerce NOAA Tech. Memo., NOAA-TM-NMFS-SWFSC-205.
5.
Barlow
,
J.
, and
Hanan
,
J.
(
1995
). “
An assessment of the status of harbor porpoise in central California
,”
Rept. Int. Whal.
Special Issue
16
,
123
140
.
6.
Becker
,
E.
,
Foley
,
D.
,
Forney
,
K.
,
Barlow
,
J.
,
Redfern
,
J.
, and
Gentemann
,
C.
(
2012
). “
Forecasting cetacean abundance patterns to enhance management decisions
,”
Endanger. Species Res.
16
,
97
112
.
7.
Becker
,
E.
,
Forney
,
K.
,
Ferguson
,
M.
,
Foley
,
D.
,
Smith
,
R.
,
Barlow
,
J.
, and
Redfern
,
J.
(
2010
). “
Comparing California current cetacean–habitat models developed using in situ and remotely sensed sea surface temperature data
,”
Mar. Ecol. Prog. Ser.
413
,
163
183
.
9.
Brandt
,
M.
,
Diederichs
,
A.
,
Betke
,
K.
, and
Nehls
,
G.
(
2011
). “
Responses of harbour porpoises to pile driving at the Horns Rev II offshore wind farm in the Danish North Sea
,”
Mar. Ecol. Prog. Ser.
421
,
205
216
.
10.
Brandt
,
M. J.
,
Hansen
,
S.
,
Diederichs
,
A.
, and
Nehls
,
G.
(
2014
). “
Do man-made structures and water depth affect the diel rhythms in click recordings of harbor porpoises (Phocoena phocoena)?
,”
Mar. Mamm. Sci.
30
,
1109
1121
.
11.
Bretherton
,
F. P.
,
Davis
,
R. E.
, and
Fandry
,
C. B.
(
1976
). “
A technique for objective analysis and design of oceanographic experiments applied to MODE-73
,”
Deep-Sea Res.
23
,
559
582
.
12.
Buckland
,
S. T.
,
Anderson
,
D. R.
,
Burnham
,
K. P.
,
Laake
,
J. L.
,
Borchers
,
D. L.
, and
Thomas
,
L.
(
2001
).
Introduction to Distance Sampling
(
Oxford University Press
,
Oxford
),
446
pp.
13.
Calambokidis
,
J.
, and
Barlow
,
J.
(
1991
). “
Chlorinated hydrocarbon concentrations and their use for describing population discreteness in harbor porpoises from Washington, Oregon, and California
,” in
Proceedings of the Second Marine Mammal Stranding Workshop, Marine Mammal Strandings in the United States
, Miami, Florida (December 3–5, 1987), U.S. Department of Commerce NOAA Tech. Memo., NMFS-98.
14.
Calambokidis
,
J.
,
Peard
,
J.
,
Steiger
,
G. H.
,
Cubbage
,
J. C.
, and
DeLong
,
R. L.
(
1984
). “
Chemical contaminants in marine mammals from Washington state
,” U.S. Department of Commerce NOAA Tech. Memo., NOS-OMS-6.
15.
Calambokidis
,
J.
,
Speich
,
S. M.
,
Peard
,
J.
,
Steiger
,
G. H.
,
Cubbage
,
J. C.
,
Fry
,
D. M.
, and
Lowenstine
,
L. J.
(
1985
). “
Biology of Puget Sound marine mammals and marine birds: Population health and evidence of pollution effects
,” U.S. Department of Commerce NOAA Tech. Memo., NOS-OMA-18.
16.
Carlstrom
,
J.
(
2005
). “
Diel variation in echolocation behavior of wild harbor porpoises
,”
Mar. Mamm. Sci.
21
,
1
12
.
17.
Carretta
,
J.
,
Oleson
,
E. M.
,
Weller
,
D. W.
,
Lang
,
A. R.
,
Forney
,
K.
,
Baker
,
J.
,
Muto
,
M. M.
,
Hanson
,
B.
,
Orr
,
A. J.
,
Huber
,
H.
,
Lowry
,
M. S.
,
Barlow
,
J.
,
Moore
,
J. E.
,
Lynch
,
D.
,
Carswell
,
L.
, and
Brownell
,
R. L.
(
2015
). “
U.S. Pacific Marine Mammal Stock Assessments: 2014
,” U.S. Department of Commerce, NOAA Tech. Memo., NOAA-TM-NMFS-SWFSC-549.
18.
Carretta
,
J. V.
,
Taylor
,
B. L.
, and
Chivers
,
S. J.
(
2001
). “
Abundance and depth distribution of harbor porpoise (Phocoena phocoena) in northern California determined from a 1995 ship survey
,”
Fish. Bull.
99
,
1
11
.
19.
Carstensen
,
J.
,
Henriksen
,
O.
, and
Teilmann
,
J.
(
2006
). “
Impacts of offshore wind farm construction on harbour porpoises: Acoustic monitoring of echolocation activity using porpoise detectors (T-PODs)
,”
Mar. Ecol. Prog. Ser.
321
,
295
308
.
20.
Chivers
,
S. J.
,
Dizon
,
A. E.
,
Gearin
,
P. J.
, and
Robertson
,
K. M.
(
2002
). “
Small-scale population structure of eastern North Pacific harbour porpoises (Phocoena phocoena) indicated by molecular genetic analyses
,”
J. Cetacean Res. Manage.
4
,
111
122
.
21.
Clausen
,
K. T.
,
Wahlberg
,
M.
,
Beedholm
,
K.
,
Deruiter
,
S.
, and
Madsen
,
P. T.
(
2010
). “
Click communication in harbour porpoises Phocoena phocoena
,”
Bioacoustics
20
,
1
28
.
22.
Cotter
,
M. P.
,
Maldini
,
D.
, and
Jefferson
,
T. A.
(
2011
). “
 ‘Porpicide’ in California: Killing of harbor porpoises (Phocoena phocoena) by coastal bottlenose dolphins (Tursiops truncatus)
,”
Mar. Mam. Sci.
28
,
E1
E15
.
23.
Dähne
,
M.
,
Gilles
,
A.
,
Lucke
,
K.
,
Peschko
,
V.
,
Adler
,
S.
,
Krügel
,
K.
,
Sundermeyer
,
J.
, and
Siebert
,
U.
(
2013a
). “
Effects of pile-driving on harbor porpoises (Phocoena phocoena) at the first offshore wind farm in Germany
,”
Environ. Res. Lett.
8
,
025002
.
24.
Dähne
,
M.
,
Verfuß
,
U. K.
,
Brandecker
,
A.
,
Siebert
,
U.
, and
Benke
,
H.
(
2013b
). “
Methodology and results of calibration of tonal click detectors for small odontocetes (C-PODs)
,”
J. Acoust. Soc. Am.
134
,
2514
2522
.
25.
DeRuiter
,
S. L.
,
Hansen
,
M.
,
Koopman
,
H. N.
,
Westgate
,
A. J.
,
Tyack
,
P. L.
, and
Madsen
,
P. T.
(
2010
). “
Propagation of narrow-band-high-frequency clicks: Measured and modeled transmission loss of porpoise-like clicks in porpoise habitats
,”
J. Acoust. Soc. Am.
127
,
560
567
.
25.
Forney
,
K. A.
(
2000
). “
Environmental models of cetacean abundance: Reducing uncertainty in population trends
,”
Cons. Bio.
14
,
1271
1286
.
26.
Forney
,
K.
,
Carretta
,
J. V.
, and
Benson
,
S. R.
(
2014
). “
Preliminary estimates of harbor porpoise abundance in Pacific Coast waters of California, Oregon and Washington, 2007-2012
,” U.S. Department of Commerce NOAA Tech. Memo. NMFS-SWFSC-537.
27.
Forney
,
K.
,
Ferguson
,
M. C.
,
Becker
,
E. A.
,
Fiedler
,
P. C.
,
Redfern
,
J. V.
,
Barlow
,
J.
,
Vilchis
,
I. L.
, and
Ballance
,
L. T.
(
2012
). “
Habitat-based spatial models of cetacean density in the eastern Pacific Ocean
,”
Endanger. Species Res.
16
,
113
133
.
28.
Forney
,
K.
,
Hanan
,
D. A.
, and
Barlow
,
J.
(
1991
). “
Detecting trends in harbor porpoise abundance from aerial surveys using analysis of covariance
,”
Fish. Bull.
89
,
1
11
.
29.
Forney
,
K. A.
,
Benson
,
S. R.
, and
Cameron
,
G. A.
(
2001
). “
Central California gillnet effort and bycatch of sensitive species
,” in
Proceedings of the Seabird Bycatch: Trends, Roadblocks, and Solutions
, University of Alaska Sea Grant, AK-SG-01-01.
30.
Gallus
,
A.
,
Dähne
,
M.
,
Verfuß
,
U. K.
,
Bräger
,
S.
,
Adler
,
S.
,
Siebert
,
U.
, and
Benke
,
H.
(
2012
). “
Use of static passive acoustic monitoring to assess the status of the ‘Critically Endangered’ Baltic harbour porpoise in German waters
,”
Endanger. Species Res.
18
,
265
278
.
31.
Gandin
,
L. S.
(
1965
).
Objective Analysis of Meteorological Fields
(
Israel Program for Scientific Translations
,
Jerusalem
),
242
pp.
32.
Jacobson
,
E. K.
,
Forney
,
K. A.
, and
Harvey
,
J. T.
(
2014
). “
Acoustic evidence that harbor porpoises (Phocoena phocoena) avoid bottlenose dolphins (Tursiops truncatus)
,”
Mar. Mam. Sci.
31
,
386
397
.
33.
Jaramillo-Legorreta
,
A.
,
Cardenas-Hinojosa
,
G.
,
Nieto-Garcia
,
E.
,
Rojas-Bracho
,
L.
,
Ver Hoef
,
J.
,
Moore
,
J.
,
Tregenza
,
N.
,
Barlow
,
J.
,
Gerrodette
,
T.
,
Thomas
,
L.
, and
Taylor
,
B.
(
2016
). “
Passive acoustic monitoring of the decline of Mexico's critically endangered vaquita
,”
Cons. Bio.
doi:.
34.
Jefferson
,
T.
,
Curry
,
B.
, and
Black
,
N.
(
1994
). “
Harbor porpoise mortality in the Monterey Bay halibut gillnet fishery, 1989
,”
Rep. Int. Whaling Comm.
15
,
445
448
.
35.
Keener
,
W.
,
Szczepaniak
,
I.
,
Adam
,
Ü.
, and
Webber
,
M.
(
2011
). “
First records of anomalously white harbour porpoises (Phocoena phocoena) from the Pacific Ocean
,”
J. Mar. Ani. Ecol.
4
,
19
24
.
36.
Koblitz
,
J. C.
(
2015
). “
Determinants for the detection function of passive acoustic data loggers
,” in
The 5th International Workshop on Detection, Classification, Localization, and Density Estimation of Marine Mammals using Passive Acoustics
, San Diego, CA.
37.
Koblitz
,
J. C.
,
Wahlberg
,
M.
, and
Stilz
,
P.
(
2012
). “
Asymmetry and dynamics of a narrow sonar beam in an echolocating harbor porpoise
,”
J. Acoust. Soc. Am.
131
,
2315
2324
.
38.
Kyhn
,
L. A.
,
Tougaard
,
J.
,
Thomas
,
L.
,
Duve
,
L. R.
,
Stenback
,
J.
,
Amundin
,
M.
,
Desportes
,
G.
, and
Teilmann
,
J.
(
2012
). “
From echolocation clicks to animal density—Acoustic sampling of harbor porpoises with static dataloggers
,”
J. Acoust. Soc. Am.
131
,
550
560
.
39.
Laake
,
J. L.
,
Calambokidis
,
J.
,
Osmek
,
S. D.
, and
Rugh
,
D. J.
(
1997
). “
Probability of detecting harbor porpoise from aerial surveys: Estimating g(0)
,”
J. Wildl. Manage.
61
,
63
75
.
39.
Linnenschmidt
,
M.
,
Teilmann
,
J.
,
Akamatsu
,
T.
,
Dietz
,
R.
, and
Miller
,
L. A.
(
2012
). “
Biosonar, dive, and foraging activity of satellite tracked harbor porpoises (Phocoena phocoena)
,”
Mar. Mamm. Sci.
29
,
E77
E97
.
40.
Marques
,
T. A.
,
Thomas
,
L.
,
Martin
,
S. W.
,
Mellinger
,
D. K.
,
Ward
,
J. A.
,
Moretti
,
D. J.
,
Harris
,
D.
, and
Tyack
,
P. L.
(
2013
). “
Estimating animal population density using passive acoustics
,”
Biol. Rev.
88
,
287
309
.
40.
Marques
,
T. A.
,
Thomas
,
L.
,
Ward
,
J.
,
DiMarzio
,
N.
, and
Tyack
,
P. L.
(
2009
). “
Estimating cetacean population density using fixed passive acoustic sensors: An example with Blainville's beaked whales
,”
J. Acoust. Soc. Am.
125
,
1982
1994
.
41.
McIntosh
,
P. C.
(
1990
). “
Oceanographic data interpolation: Objective analysis and splines
,”
J. Geophys. Res.: Oceans (1978–2012)
,
95
,
13529
13541
.
42.
Mellinger
,
D. K.
,
Stafford
,
K. M.
,
Moore
,
S.
,
Dziak
,
R. P.
, and
Matsumoto
,
H.
(
2007
). “
Fixed passive acoustic observation methods for cetaceans
,”
J. Oceanogr.
20
,
36
45
.
43.
Miller
,
D. L.
(
2015
). “
Distance: Distance sampling detection function and abundance estimation
,” R package version 0.9.4. https://CRAN.R-project.org/package=Distance (Last viewed 2 January 2017).
44.
R Core Team
(
2016
). “
R: A language and environment for statistical computing
,” R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/ (Last viewed 2 January 2017).
45.
Raum-Suryan
,
K. L.
, and
Harvey
,
J. T.
(
1998
). “
Distribution and abundance of and habitat use by harbor porpoise, Phocoena phocoena, off the northern San Juan Islands, Washington
,”
Fish. Bull.
96
,
808
822
.
46.
Seber
,
G. A. F.
(
1982
).
The Estimation of Animal Abundance
, 2nd ed. (
Griffin
,
London
),
654
pp.
47.
Su
,
Y.
, and
Yajima
,
M.
(
2015
). “
R2jags: Using R to Run ‘JAGS
,’ ” R package version 0.5-7. https://CRAN.R-project.org/package=R2jags (Last viewed 2 January 2017).
49.
Thompson
,
P. M.
,
Brookes
,
K. L.
,
Graham
,
I. M.
,
Barton
,
T. M.
,
Needham
,
K.
,
Bradbury
,
G.
, and
Merchant
,
N. D.
(
2013
). “
Short-term disturbance by a commercial two-dimensional seismic survey does not lead to long-term displacement of harbour porpoises
,”
Proc. R. Soc. B
280
,
1
8
.
49.
Thomson
,
R. E.
, and
Emery
,
W. J.
(
2014
).
Data Analysis Methods in Physical Oceanography
(
Elsevier
,
New York
).
50.
Tregenza
,
N.
(
2012
). CPOD.exe: A Guide for Users.http://www.chelonia.co.uk/downloads/CPOD.pdf (Last viewed 2 January 2017).
51.
Verfuß
,
U. K.
,
Honnef
,
C.
,
Meding
,
A.
,
Dähne
,
M.
,
Mundry
,
R.
, and
Benke
,
H.
(
2007
). “
Geographical and seasonal variation of harbor porpoise (Phocoena phocoena) presence in the German Baltic Sea revealed by passive acoustic monitoring
,”
J. Mar. Biol. Ass. U.K.
87
,
165
176
.
52.
Wilkin
,
S. M.
,
Cordaro
,
J.
, and
Gulland
,
F.
(
2012
). “
An unusual mortality event of harbor porpoises (Phocoena phocoena) off Central California: Increase in blunt trauma rather than an epizootic
,”
Aquat. Mamm.
38
,
301
310
.
53.
Williamson
,
L. D.
,
Brookes
,
K. L.
,
Scott
,
B. E.
,
Graham
,
I. M.
,
Bradbury
,
G.
,
Hammond
,
P. S.
, and
Thompson
,
P. M.
(
2016
). “
Echolocation detections and digital video surveys provide reliable estimates of the relative density of harbour porpoises
,”
Methods Ecol. Evol.
7
,
762
769
.
54.
Wisniewska
,
D. M.
,
Johnson
,
M.
,
Teilmann
,
J.
,
Rojano-Doñate
,
L.
,
Shearer
,
J.
,
Sveegaard
,
S.
,
Miller
,
L. A.
,
Siebert
,
U.
, and
Madsen
,
P. T.
(
2016
). “
Ultra-high foraging rates of harbor porpoises make them vulnerable to anthropogenic disturbance
,”
Curr. Biol.
26
,
1441
1446
.
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