Microfluidics flow-patterning has been utilized for the construction of chip-scale miniaturized DNA and protein barcode arrays. Such arrays have been used for specific clinical and fundamental investigations in which many proteins are assayed from single cells or other small sample sizes. However, flow-patterned arrays are hand-prepared, and so are impractical for broad applications. We describe an integrated robotics/microfluidics platform for the automated preparation of such arrays, and we apply it to the batch fabrication of up to eighteen chips of flow-patterned DNA barcodes. The resulting substrates are comparable in quality with hand-made arrays and exhibit excellent substrate-to-substrate consistency. We demonstrate the utility and reproducibility of robotics-patterned barcodes by utilizing two flow-patterned chips for highly parallel assays of a panel of secreted proteins from single macrophage cells.
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September 2011
Research Article|
September 16 2011
A robotics platform for automated batch fabrication of high density, microfluidics-based DNA microarrays, with applications to single cell, multiplex assays of secreted proteins Available to Purchase
Habib Ahmad;
Habib Ahmad
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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Alex Sutherland;
Alex Sutherland
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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Young Shik Shin;
Young Shik Shin
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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Kiwook Hwang;
Kiwook Hwang
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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Lidong Qin;
Lidong Qin
a)
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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Russell-John Krom;
Russell-John Krom
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
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James R. Heath
James R. Heath
b)
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Search for other works by this author on:
Habib Ahmad
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Alex Sutherland
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Young Shik Shin
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Kiwook Hwang
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Lidong Qin
a)
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
Russell-John Krom
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
James R. Heath
b)
NanoSystems Biology Cancer Center and Division of Chemistry and Chemical Engineering,
California Institute of Technology
, MC 127–72, 1200 East California Boulevard, Pasadena, California 91125, USA
a)
Present address: The Methodist Hospital Research Institute; 6670 Bertner ST, Mail Stop R7-121, Houston TX 77030.
b)
Author to whom correspondence should be addressed. Electronic mail: [email protected].
Rev. Sci. Instrum. 82, 094301 (2011)
Article history
Received:
June 11 2011
Accepted:
August 15 2011
Citation
Habib Ahmad, Alex Sutherland, Young Shik Shin, Kiwook Hwang, Lidong Qin, Russell-John Krom, James R. Heath; A robotics platform for automated batch fabrication of high density, microfluidics-based DNA microarrays, with applications to single cell, multiplex assays of secreted proteins. Rev. Sci. Instrum. 1 September 2011; 82 (9): 094301. https://doi.org/10.1063/1.3636077
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