Peptide classification using nanopore-based devices promises to be a breakthrough method in basic research, diagnostics, and analytics. However, the measured blockage currents suffer from a low signal-to-noise ratio and a high information density that has hitherto not been fully deciphered. Some simple machine learning approaches using average current blockade depths and dwell-times have been investigated to improve this situation. In this work, a comprehensive statistical analysis of nanopore current signals is performed and demonstrated to be sufficient for classifying up to 42 peptides with over 70% accuracy. Two sets of features, the statistical moments and the catch22 set, are compared both in their representations and after training small classifier neural networks. We demonstrate that complex features of the events, captured in both the catch22 set and the central moments, are key to classifying peptides with otherwise similar mean currents. These results highlight the efficacy of purely statistical analysis of nanopore data and suggest a path forward for more sophisticated classification techniques.
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28 February 2025
Research Article|
February 25 2025
Peptide classification from statistical analysis of nanopore sensing experiments
Julian Hoßbach
;
Julian Hoßbach
(Conceptualization, Investigation, Software, Writing – review & editing)
1
Institute for Computational Physics, University of Stuttgart
, 70569 Stuttgart, Germany
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Samuel Tovey
;
Samuel Tovey
(Software, Writing – original draft, Writing – review & editing)
1
Institute for Computational Physics, University of Stuttgart
, 70569 Stuttgart, Germany
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Tobias Ensslen
;
Tobias Ensslen
(Resources, Writing – review & editing)
2
Laboratory for Membrane Physiology and Technology, Department of Physiology, Faculty of Medicine, University of Freiburg
, 79104 Freiburg, Germany
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Jan C. Behrends
;
Jan C. Behrends
(Funding acquisition, Writing – review & editing)
2
Laboratory for Membrane Physiology and Technology, Department of Physiology, Faculty of Medicine, University of Freiburg
, 79104 Freiburg, Germany
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Christian Holm
Christian Holm
a)
(Funding acquisition, Supervision, Writing – review & editing)
1
Institute for Computational Physics, University of Stuttgart
, 70569 Stuttgart, Germany
a)Author to whom correspondence should be addressed: [email protected]
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Julian Hoßbach
1
Samuel Tovey
1
Tobias Ensslen
2
Jan C. Behrends
2
Christian Holm
1,a)
1
Institute for Computational Physics, University of Stuttgart
, 70569 Stuttgart, Germany
2
Laboratory for Membrane Physiology and Technology, Department of Physiology, Faculty of Medicine, University of Freiburg
, 79104 Freiburg, Germany
a)Author to whom correspondence should be addressed: [email protected]
J. Chem. Phys. 162, 084107 (2025)
Article history
Received:
November 25 2024
Accepted:
January 28 2025
Citation
Julian Hoßbach, Samuel Tovey, Tobias Ensslen, Jan C. Behrends, Christian Holm; Peptide classification from statistical analysis of nanopore sensing experiments. J. Chem. Phys. 28 February 2025; 162 (8): 084107. https://doi.org/10.1063/5.0250399
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