The nitrile (C≡N) stretching vibration is widely used as a site-specific environmental probe of proteins and, as such, many computational studies have been used to investigate the factors that affect its frequency (νCN). These studies, most of which were carried out in the ground electronic state of the molecule of interest, revealed that the formation of a normal or linear hydrogen bond (H-bond) with the nitrile group results in a blueshift in its νCN. Recently, however, several experimental studies showed that for certain aromatic nitriles, solvent relaxations in their excited electronic state(s) induce a redshift (blueshift) in νCN in protic (aprotic) solvents, suggesting that the effect of hydrogen-bonding (H-bonding) interactions on νCN may depend on the electronic state of the molecule. To test this possibility, herein we combine molecular dynamics simulations and quantum mechanical calculations to assess the effect of H-bonding interactions on the νCN of 5-cyanoindole (5-CNI) in its different electronic states. We find that its C≡N group can form either one H-bond (single-H-bond) or two H-bonds (d-H-bonds) with the solvent molecules and that in the ground electronic state, a single-H-bond can lead νCN to shift either to a higher or lower frequency, depending on its angle, which is consistent with previous studies, whereas the d-H-bonds cause νCN to redshift. However, in its lowest-lying excited electronic state (i.e., S1), which has the characteristics of a charge-transfer state, all H-bonds induce a redshift in νCN, with the d-H-bonds being most effective in this regard.
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28 September 2024
Research Article|
September 27 2024
Blueshift or redshift? Effect of hydrogen bonding interactions on the C≡N stretching frequency of 5-cyanoindole
Yuyao Yang
;
Yuyao Yang
(Data curation, Formal analysis, Investigation, Writing – original draft, Writing – review & editing)
1
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University
, Beijing 100871, China
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Ruoqi Zhao;
Ruoqi Zhao
(Data curation, Investigation, Writing – review & editing)
2
Institute of Theoretical and Computational Chemistry, Jilin University
, Changchun, Jilin 130023, China
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Wenkai Zhang
;
Wenkai Zhang
(Conceptualization, Writing – review & editing)
3
School of Physics and Astronomy, Applied Optics Beijing Area Major Laboratory, Center for Advanced Quantum Studies, Beijing Normal University
, Beijing 100875, China
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Jiali Gao
;
Jiali Gao
a)
(Conceptualization, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing)
4
Institute of Systems and Physical Biology, Shenzhen Bay Laboratory
, Shenzhen, Guangdong 518055, China
5
Department of Chemistry and Supercomputing Institute, University of Minnesota
, Minneapolis, Minnesota 55455, USA
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Feng Gai
Feng Gai
a)
(Conceptualization, Funding acquisition, Investigation, Supervision, Writing – original draft, Writing – review & editing)
1
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University
, Beijing 100871, China
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J. Chem. Phys. 161, 124310 (2024)
Article history
Received:
July 12 2024
Accepted:
August 19 2024
Citation
Yuyao Yang, Ruoqi Zhao, Wenkai Zhang, Jiali Gao, Feng Gai; Blueshift or redshift? Effect of hydrogen bonding interactions on the C≡N stretching frequency of 5-cyanoindole. J. Chem. Phys. 28 September 2024; 161 (12): 124310. https://doi.org/10.1063/5.0228319
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