The transport of excess protons and hydroxide ions in water underlies numerous important chemical and biological processes. Accurately simulating the associated transport mechanisms ideally requires utilizing ab initio molecular dynamics simulations to model the bond breaking and formation involved in proton transfer and path-integral simulations to model the nuclear quantum effects relevant to light hydrogen atoms. These requirements result in a prohibitive computational cost, especially at the time and length scales needed to converge proton transport properties. Here, we present machine-learned potentials (MLPs) that can model both excess protons and hydroxide ions at the generalized gradient approximation and hybrid density functional theory levels of accuracy and use them to perform multiple nanoseconds of both classical and path-integral proton defect simulations at a fraction of the cost of the corresponding ab initio simulations. We show that the MLPs are able to reproduce ab initio trends and converge properties such as the diffusion coefficients of both excess protons and hydroxide ions. We use our multi-nanosecond simulations, which allow us to monitor large numbers of proton transfer events, to analyze the role of hypercoordination in the transport mechanism of the hydroxide ion and provide further evidence for the asymmetry in diffusion between excess protons and hydroxide ions.
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21 August 2023
Research Article|
August 15 2023
Developing machine-learned potentials to simultaneously capture the dynamics of excess protons and hydroxide ions in classical and path integral simulations
Austin O. Atsango
;
Austin O. Atsango
(Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing)
1
Department of Chemistry, Stanford University
, Stanford, California 94305, USA
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Tobias Morawietz
;
Tobias Morawietz
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing)
1
Department of Chemistry, Stanford University
, Stanford, California 94305, USA
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Ondrej Marsalek
;
Ondrej Marsalek
(Formal analysis, Investigation, Methodology, Validation, Writing – review & editing)
2
Faculty of Mathematics and Physics, Charles University
, Prague, Czech Republic
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Thomas E. Markland
Thomas E. Markland
a)
(Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing)
1
Department of Chemistry, Stanford University
, Stanford, California 94305, USA
a)Author to whom correspondence should be addressed: [email protected]
Search for other works by this author on:
Austin O. Atsango
1
Tobias Morawietz
1
Ondrej Marsalek
2
Thomas E. Markland
1,a)
1
Department of Chemistry, Stanford University
, Stanford, California 94305, USA
2
Faculty of Mathematics and Physics, Charles University
, Prague, Czech Republic
a)Author to whom correspondence should be addressed: [email protected]
J. Chem. Phys. 159, 074101 (2023)
Article history
Received:
June 13 2023
Accepted:
July 31 2023
Citation
Austin O. Atsango, Tobias Morawietz, Ondrej Marsalek, Thomas E. Markland; Developing machine-learned potentials to simultaneously capture the dynamics of excess protons and hydroxide ions in classical and path integral simulations. J. Chem. Phys. 21 August 2023; 159 (7): 074101. https://doi.org/10.1063/5.0162066
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