A large-scale quantum chemical calculation program, Dcdftbmd, was integrated with a Python-based advanced atomistic simulation program, i-PI. The implementation of a client–server model enabled hierarchical parallelization with respect to replicas and force evaluations. The established framework demonstrated that quantum path integral molecular dynamics simulations can be executed with high efficiency for systems consisting of a few tens of replicas and containing thousands of atoms. The application of the framework to bulk water systems, with and without an excess proton, demonstrated that nuclear quantum effects are significant for intra- and inter-molecular structural properties, including oxygen–hydrogen bond distance and radial distribution function around the hydrated excess proton.
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28 April 2023
Research Article|
April 24 2023
Enabling large-scale quantum path integral molecular dynamics simulations through the integration of Dcdftbmd and i-PI codes
Special Collection:
High Performance Computing in Chemical Physics
Yoshifumi Nishimura
;
Yoshifumi Nishimura
(Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing)
1
Waseda Research Institute for Science and Engineering, Waseda University
, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
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Hiromi Nakai
Hiromi Nakai
a)
(Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing)
1
Waseda Research Institute for Science and Engineering, Waseda University
, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
2
Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University
, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
a)Author to whom correspondence should be addressed: nakai@waseda.jp
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a)Author to whom correspondence should be addressed: nakai@waseda.jp
Note: This paper is part of the JCP Special Topic on High Performance Computing in Chemical Physics.
J. Chem. Phys. 158, 164101 (2023)
Article history
Received:
February 23 2023
Accepted:
April 10 2023
Citation
Yoshifumi Nishimura, Hiromi Nakai; Enabling large-scale quantum path integral molecular dynamics simulations through the integration of Dcdftbmd and i-PI codes. J. Chem. Phys. 28 April 2023; 158 (16): 164101. https://doi.org/10.1063/5.0147535
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