We describe a local surrogate model for use in conjunction with global structure search methods. The model follows the Gaussian approximation potential formalism and is based on the smooth overlap of atomic positions descriptor with sparsification in terms of a reduced number of local environments using mini-batch k-means. The model is implemented in the Atomistic Global Optimization X framework and used as a partial replacement of the local relaxations in basin hopping structure search. The approach is shown to be robust for a wide range of atomistic systems, including molecules, nanoparticles, surface supported clusters, and surface thin films. The benefits in a structure search context of a local surrogate model are demonstrated. This includes the ability to benefit from transfer learning from smaller systems as well as the possibility to perform concurrent multi-stoichiometry searches.
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7 November 2022
Research Article|
November 07 2022
Atomistic structure search using local surrogate model
Nikolaj Rønne;
Nikolaj Rønne
(Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Mads-Peter V. Christiansen
;
Mads-Peter V. Christiansen
(Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Andreas Møller Slavensky;
Andreas Møller Slavensky
(Conceptualization, Investigation)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Zeyuan Tang
;
Zeyuan Tang
(Conceptualization, Investigation)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Florian Brix;
Florian Brix
(Conceptualization, Investigation)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Mikkel Elkjær Pedersen;
Mikkel Elkjær Pedersen
(Conceptualization)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Malthe Kjær Bisbo;
Malthe Kjær Bisbo
(Conceptualization)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
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Bjørk Hammer
Bjørk Hammer
a)
(Conceptualization, Funding acquisition, Investigation, Methodology, Supervision, Writing – original draft, Writing – review & editing)
Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University
, DK-8000 Aarhus, Denmark
a)Author to whom correspondence should be addressed: [email protected]
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a)Author to whom correspondence should be addressed: [email protected]
J. Chem. Phys. 157, 174115 (2022)
Article history
Received:
August 19 2022
Accepted:
October 14 2022
Citation
Nikolaj Rønne, Mads-Peter V. Christiansen, Andreas Møller Slavensky, Zeyuan Tang, Florian Brix, Mikkel Elkjær Pedersen, Malthe Kjær Bisbo, Bjørk Hammer; Atomistic structure search using local surrogate model. J. Chem. Phys. 7 November 2022; 157 (17): 174115. https://doi.org/10.1063/5.0121748
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