Packing and crowding are used in biology as mechanisms to (self-)regulate internal molecular or cellular processes based on collective signaling. Here, we study how the transition kinetics of an internal “switch” of responsive macromolecules is modified collectively by their spatial packing. We employ Brownian dynamics simulations of a model of Responsive Colloids, in which an explicit internal degree of freedom—here, the particle size—moving in a bimodal energy landscape self-consistently responds to the density fluctuations of the crowded environment. We demonstrate that populations and transition times for the two-state switching kinetics can be tuned over one order of magnitude by “self-crowding.” An exponential scaling law derived from a combination of Kramers’ and liquid state perturbation theory is in very good agreement with the simulations.
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28 December 2021
Research Article|
December 22 2021
Modulating internal transition kinetics of responsive macromolecules by collective crowding
Upayan Baul
;
Upayan Baul
1
Applied Theoretical Physics—Computational Physics, Physikalisches Institut, Albert-Ludwigs-Universität Freiburg
, D-79104 Freiburg, Germany
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Nils Göth
;
Nils Göth
1
Applied Theoretical Physics—Computational Physics, Physikalisches Institut, Albert-Ludwigs-Universität Freiburg
, D-79104 Freiburg, Germany
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Michael Bley;
Michael Bley
1
Applied Theoretical Physics—Computational Physics, Physikalisches Institut, Albert-Ludwigs-Universität Freiburg
, D-79104 Freiburg, Germany
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Joachim Dzubiella
Joachim Dzubiella
a)
1
Applied Theoretical Physics—Computational Physics, Physikalisches Institut, Albert-Ludwigs-Universität Freiburg
, D-79104 Freiburg, Germany
2
Cluster of Excellence LivMatS @ FIT—Freiburg Center for Interactive Materials and Bioinspired Technologies, Albert-Ludwigs-Universität Freiburg
, D-79110 Freiburg, Germany
a)Author to whom correspondence should be addressed: joachim.dzubiella@physik.uni-freiburg.de
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a)Author to whom correspondence should be addressed: joachim.dzubiella@physik.uni-freiburg.de
J. Chem. Phys. 155, 244902 (2021)
Article history
Received:
October 21 2021
Accepted:
December 01 2021
Citation
Upayan Baul, Nils Göth, Michael Bley, Joachim Dzubiella; Modulating internal transition kinetics of responsive macromolecules by collective crowding. J. Chem. Phys. 28 December 2021; 155 (24): 244902. https://doi.org/10.1063/5.0076139
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