Coordination numbers are among the central quantities to describe the local environment of atoms and are thus used in various applications such as structure analysis, fingerprints, and parameters. Yet, there is no consensus regarding a practical algorithm, and many proposed methods are designed for specific systems. In this work, we propose a scale-free and parameter-free algorithm for nearest neighbor identification. This algorithm extends the powerful Solid-Angle based Nearest-Neighbor (SANN) framework to explicitly include local anisotropy. As such, our Anisotropically corrected SANN (ASANN) algorithm provides with a fast, robust, and adaptive method for computing coordination numbers. The ASANN algorithm is applied to flat and corrugated metallic surfaces to demonstrate that the expected coordination numbers are retrieved without the need for any system-specific adjustments. The same applies to the description of the coordination numbers of metal atoms in AuCu nanoparticles, and we show that ASANN based coordination numbers are well adapted for automatically counting neighbors and the establishment of cluster expansions. Analysis of classical molecular dynamics simulations of an electrified graphite electrode reveals a strong link between the coordination number of Cs+ ions and their position within the double layer, a relation that is absent for Na+, which keeps its first solvation shell even close to the electrode.
Skip Nav Destination
Article navigation
14 January 2020
Research Article|
January 13 2020
Parameter-free coordination numbers for solutions and interfaces
Ruben Staub;
Ruben Staub
Univ. Lyon, Ecole Normale Supérieure de Lyon, CNRS Université Lyon 1, Laboratoire de Chimie UMR 5182
, 46 Allée d’Italie, F-69364 Lyon, France
Search for other works by this author on:
Stephan N. Steinmann
Stephan N. Steinmann
a)
Univ. Lyon, Ecole Normale Supérieure de Lyon, CNRS Université Lyon 1, Laboratoire de Chimie UMR 5182
, 46 Allée d’Italie, F-69364 Lyon, France
Search for other works by this author on:
a)
Electronic mail: [email protected]
J. Chem. Phys. 152, 024124 (2020)
Article history
Received:
November 07 2019
Accepted:
December 23 2019
Citation
Ruben Staub, Stephan N. Steinmann; Parameter-free coordination numbers for solutions and interfaces. J. Chem. Phys. 14 January 2020; 152 (2): 024124. https://doi.org/10.1063/1.5135696
Download citation file:
Pay-Per-View Access
$40.00
Sign In
You could not be signed in. Please check your credentials and make sure you have an active account and try again.
Citing articles via
DeePMD-kit v2: A software package for deep potential models
Jinzhe Zeng, Duo Zhang, et al.
Beyond the Debye–Hückel limit: Toward a general theory for concentrated electrolytes
Mohammadhasan Dinpajooh, Nadia N. Intan, et al.
Related Content
A parameter-free, solid-angle based, nearest-neighbor algorithm
J. Chem. Phys. (June 2012)
A transferable artificial neural network model for atomic forces in nanoparticles
J. Chem. Phys. (November 2018)
Simple and efficient methods for local structural analysis in polydisperse hard disk systems
J. Chem. Phys. (May 2024)
Beyond single-crystal surfaces: The GAL21 water/metal force field
J. Chem. Phys. (November 2022)
Locally adaptive method to define coordination shell
J. Chem. Phys. (August 2016)