The water structure around hydrophobic groups governs various biochemical processes. There is an ongoing debate on whether water molecules near hydrophobic groups are more ordered with greater participation in water-water hydrogen bonding with respect to water in the pure bulk state. The water structure around six different hydrophobic amino acid side chain analog molecules has been studied in pure water using molecular dynamics simulations. The analysis of water tetrahedral order parameter and the number of hydrogen bonds formed by the individual water molecules in the first hydration shell of the hydrophobic analogs provide evidence that both ordering and hydrogen bonds involving water molecules are to some extent reduced in the hydrophobic hydration shell. It is revealed that the water tetrahedrality in the outer part of the first hydrophobic hydration shell is equivalent to bulk water for all the water models except for the TIP4P-2005 model which shows marginally higher tetrahedrality. However, irrespective of the model employed, water tetrahedrality has always been found to be reduced in the inner part of the first hydration shell, which eventually makes the overall water tetrahedrality in the first hydrophobic hydration shell marginally lower than that observed for pure bulk water. Importantly, it is noticed that the decrease in water structuring exhibits solute size dependencies. Around a small solute like methane, the water tetrahedral ordering or hydrogen bonding propensity is quite similar to that of the bulk state. The effect, reduction in water structuring, is however more pronounced for relatively larger solutes.
Skip Nav Destination
Article navigation
14 June 2017
Research Article|
June 14 2017
Water structure around hydrophobic amino acid side chain analogs using different water models
Timir Hajari;
Timir Hajari
Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology
, Kharagpur 721302, India
Search for other works by this author on:
Sanjoy Bandyopadhyay
Sanjoy Bandyopadhyay
a)
Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology
, Kharagpur 721302, India
Search for other works by this author on:
a)
Author to whom correspondence should be addressed: sanjoy@chem.iitkgp.ernet.in
J. Chem. Phys. 146, 225104 (2017)
Article history
Received:
March 29 2017
Accepted:
May 31 2017
Citation
Timir Hajari, Sanjoy Bandyopadhyay; Water structure around hydrophobic amino acid side chain analogs using different water models. J. Chem. Phys. 14 June 2017; 146 (22): 225104. https://doi.org/10.1063/1.4985671
Download citation file:
Sign in
Don't already have an account? Register
Sign In
You could not be signed in. Please check your credentials and make sure you have an active account and try again.
Pay-Per-View Access
$40.00
Citing articles via
DeePMD-kit v2: A software package for deep potential models
Jinzhe Zeng, Duo Zhang, et al.
Related Content
Role of local order in anomalous ion diffusion: Interrogation through tetrahedral entropy of aqueous solvation shells
J. Chem. Phys. (October 2020)
Tuning the tetrahedrality of the hydrogen-bonded network of water: Comparison of the effects of pressure and added salts
J. Chem. Phys. (June 2016)
Triplet correlation functions in liquid water
J. Chem. Phys. (November 2014)
Solvation of LiCl in model liquids with high to low hydrogen bond strengths
J. Chem. Phys. (May 2017)