DNA oligomers with properly designed sequences self-assemble into well defined constructs. Here, we exploit this methodology to produce bulk quantities of tetravalent DNA nanostars (each one composed of 196 nucleotides) and to explore the structural signatures of their aggregation process. We report small-angle neutron scattering experiments focused on the evaluation of both the form factor and the temperature evolution of the scattered intensity at a nanostar concentration where the system forms a tetravalent equilibrium gel. We also perform molecular dynamics simulations of one isolated tetramer to evaluate the form factor numerically, without resorting to any approximate shape. The numerical form factor is found to be in very good agreement with the experimental one. Simulations predict an essentially temperature-independent form factor, offering the possibility to extract the effective structure factor and its evolution during the equilibrium gelation.
Skip Nav Destination
Article navigation
28 August 2016
Research Article|
August 31 2016
Small-angle neutron scattering and molecular dynamics structural study of gelling DNA nanostars
J. Fernandez-Castanon
;
J. Fernandez-Castanon
1
Sapienza–Università di Roma
, P.le A. Moro 5, 00185 Roma, Italy
Search for other works by this author on:
F. Bomboi;
F. Bomboi
1
Sapienza–Università di Roma
, P.le A. Moro 5, 00185 Roma, Italy
Search for other works by this author on:
L. Rovigatti
;
L. Rovigatti
2Rudolf Peierls C.T.P.,
University of Oxford
, 1 Keble Road, Oxford OX1 3NP, United Kingdom
3Faculty of Physics,
University of Vienna
, Boltzmanngasse 5, A-1090 Vienna, Austria
Search for other works by this author on:
M. Zanatta;
M. Zanatta
4Dipartimento di Fisica,
Università di Perugia
, Via Pascoli, 06123 Perugia, Italy
5CNR-ISC,
UOS Sapienza–Università di Roma
, I-00186 Roma, Italy
Search for other works by this author on:
A. Paciaroni;
A. Paciaroni
4Dipartimento di Fisica,
Università di Perugia
, Via Pascoli, 06123 Perugia, Italy
Search for other works by this author on:
L. Comez;
L. Comez
4Dipartimento di Fisica,
Università di Perugia
, Via Pascoli, 06123 Perugia, Italy
6IOM-CNR, UOS Perugia c/o Dipartimento di Fisica e Geologia,
Università di Perugia
, Via Pascoli, 06123 Perugia, Italy
Search for other works by this author on:
L. Porcar;
L. Porcar
7
Institut Laue-Langevin
, 71 Avenue des Martyrs, CS 20156, 38042 Grenoble Cedex 9, France
Search for other works by this author on:
C. J. Jafta;
C. J. Jafta
8
Helmholtz-Zentrum Berlin
, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
Search for other works by this author on:
G. C. Fadda;
G. C. Fadda
9
Laboratoire Léon Brillouin, LLB, CEA Saclay
, 91191 Gif-sur-Yvette Cedex, France
Search for other works by this author on:
T. Bellini;
T. Bellini
10Department of Medical Biotechnology and Translational Medicine,
Università di Milano
, I-20133 Milano, Italy
Search for other works by this author on:
F. Sciortino
F. Sciortino
a)
1
Sapienza–Università di Roma
, P.le A. Moro 5, 00185 Roma, Italy
5CNR-ISC,
UOS Sapienza–Università di Roma
, I-00186 Roma, Italy
Search for other works by this author on:
a)
Author to whom correspondence should be addressed. Electronic mail: francesco.sciortino@uniroma1.it
J. Chem. Phys. 145, 084910 (2016)
Article history
Received:
May 05 2016
Accepted:
August 05 2016
Citation
J. Fernandez-Castanon, F. Bomboi, L. Rovigatti, M. Zanatta, A. Paciaroni, L. Comez, L. Porcar, C. J. Jafta, G. C. Fadda, T. Bellini, F. Sciortino; Small-angle neutron scattering and molecular dynamics structural study of gelling DNA nanostars. J. Chem. Phys. 28 August 2016; 145 (8): 084910. https://doi.org/10.1063/1.4961398
Download citation file:
Sign in
Don't already have an account? Register
Sign In
You could not be signed in. Please check your credentials and make sure you have an active account and try again.
Pay-Per-View Access
$40.00
Citing articles via
DeePMD-kit v2: A software package for deep potential models
Jinzhe Zeng, Duo Zhang, et al.