In this work, we derive a general effective diffusion coefficient to describe the two-dimensional (2D) diffusion in a narrow and smoothly asymmetric channel of varying width, embedded on a curved surface, in the simple diffusion of non-interacting, point-like particles under no external field. To this end, we extend the generalization of the Kalinay–Percus' projection method [J. Chem. Phys. 122, 204701 (2005); Kalinay–Percus', Phys. Rev. E 74, 041203 (2006)] for the asymmetric channels introduced in [L. Dagdug and I. Pineda, J. Chem. Phys. 137, 024107 (2012)], to project the anisotropic two-dimensional diffusion equation on a curved manifold, into an effective one-dimensional generalized Fick-Jacobs equation that is modified according to the curvature of the surface. For such purpose we construct the whole expansion, writing the marginal concentration as a perturbation series. The lowest order in the perturbation parameter, which corresponds to the Fick-Jacobs equation, contains an additional term that accounts for the curvature of the surface. We explicitly obtain the first-order correction for the invariant effective concentration, which is defined as the correct marginal concentration in one variable, and we obtain the first approximation to the effective diffusion coefficient analogous to Bradley's coefficient [Phys. Rev. E 80, 061142 (2009)] as a function of the metric elements of the surface. In a straightforward manner, we study the perturbation series up to the nth order, and derive the full effective diffusion coefficient for two-dimensional diffusion in a narrow asymmetric channel, with modifications according to the metric terms. This expression is given as
Skip Nav Destination
Article navigation
7 December 2013
Research Article|
December 05 2013
Diffusion in narrow channels on curved manifolds
Guillermo Chacón-Acosta;
Guillermo Chacón-Acosta
a)
1Department of Applied Mathematics and Systems,
Universidad Autónoma Metropolitana-Cuajimalpa
, Artificios 40, México D. F. 01120, Mexico
Search for other works by this author on:
Inti Pineda;
Inti Pineda
b)
2Department of Physics,
Universidad Autónoma Metropolitana-Iztapalapa
, San Rafael Atlixco 186, México D. F. 09340, Mexico
Search for other works by this author on:
Leonardo Dagdug
Leonardo Dagdug
c)
2Department of Physics,
Universidad Autónoma Metropolitana-Iztapalapa
, San Rafael Atlixco 186, México D. F. 09340, Mexico
Search for other works by this author on:
a)
Electronic mail: [email protected]
b)
Electronic mail: [email protected]
c)
Electronic mail: [email protected]
J. Chem. Phys. 139, 214115 (2013)
Article history
Received:
September 30 2013
Accepted:
November 15 2013
Citation
Guillermo Chacón-Acosta, Inti Pineda, Leonardo Dagdug; Diffusion in narrow channels on curved manifolds. J. Chem. Phys. 7 December 2013; 139 (21): 214115. https://doi.org/10.1063/1.4836617
Download citation file:
Pay-Per-View Access
$40.00
Sign In
You could not be signed in. Please check your credentials and make sure you have an active account and try again.
Citing articles via
DeePMD-kit v2: A software package for deep potential models
Jinzhe Zeng, Duo Zhang, et al.
CREST—A program for the exploration of low-energy molecular chemical space
Philipp Pracht, Stefan Grimme, et al.
Related Content
Diffusion in two-dimensional conical varying width channels: Comparison of analytical and numerical results
J. Chem. Phys. (November 2012)
Projection of two-dimensional diffusion in a curved midline and narrow varying width channel onto the longitudinal dimension
J. Chem. Phys. (July 2012)
On the description of Brownian particles in confinement on a non-Cartesian coordinates basis
J. Chem. Phys. (August 2016)
Effective one-dimensional diffusion on curved surfaces: Catenoid and pseudosphere
AIP Conference Proceedings (January 2014)