We present an identity for an unbiased estimate of a general statistical distribution. The identity computes the distribution density from dividing a histogram sum over a local window by a correction factor from a mean-force integral, and the mean force can be evaluated as a configuration average. We show that the optimal window size is roughly the inverse of the local mean-force fluctuation. The new identity offers a more robust and precise estimate than a previous one by Adib and Jarzynski [J. Chem. Phys. 122, 014114 (2005)] https://doi.org/10.1063/1.1829631. It also allows a straightforward generalization to an arbitrary ensemble and a joint distribution of multiple variables. Particularly we derive a mean-force enhanced version of the weighted histogram analysis method. The method can be used to improve distributions computed from molecular simulations. We illustrate the use in computing a potential energy distribution, a volume distribution in a constant-pressure ensemble, a radial distribution function, and a joint distribution of amino acid backbone dihedral angles.
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28 May 2012
Research Article|
May 29 2012
Estimating statistical distributions using an integral identity Available to Purchase
Cheng Zhang;
Cheng Zhang
1Applied Physics Program and Department of Bioengineering,
Rice University
, Houston, Texas 77005, USA
Search for other works by this author on:
Jianpeng Ma
Jianpeng Ma
a)
1Applied Physics Program and Department of Bioengineering,
Rice University
, Houston, Texas 77005, USA
2Verna and Marrs McLean Department of Biochemistry and Molecular Biology,
Baylor College of Medicine
, One Baylor Plaza, BCM-125 Houston, Texas 77030, USA
Search for other works by this author on:
Cheng Zhang
1
Jianpeng Ma
1,2,a)
1Applied Physics Program and Department of Bioengineering,
Rice University
, Houston, Texas 77005, USA
2Verna and Marrs McLean Department of Biochemistry and Molecular Biology,
Baylor College of Medicine
, One Baylor Plaza, BCM-125 Houston, Texas 77030, USA
a)
Electronic mail: [email protected].
J. Chem. Phys. 136, 204113 (2012)
Article history
Received:
February 08 2012
Accepted:
May 10 2012
Citation
Cheng Zhang, Jianpeng Ma; Estimating statistical distributions using an integral identity. J. Chem. Phys. 28 May 2012; 136 (20): 204113. https://doi.org/10.1063/1.4721638
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