Algorithms for parallel unconstrained minimization of molecular systems are examined. The overall framework of minimization is the same except for the choice of directions for updating the quasi-Newton Hessian. Ideally these directions are chosen so the updated Hessian gives steps that are same as using the Newton method. Three approaches to determine the directions for updating are presented: the straightforward approach of simply cycling through the Cartesian unit vectors (finite difference), a concurrent set of minimizations, and the Lanczos method. We show the importance of using preconditioning and a multiple secant update in these approaches. For the Lanczos algorithm, an initial set of directions is required to start the method, and a number of possibilities are explored. To test the methods we used the standard 50-dimensional analytic Rosenbrock function. Results are also reported for the histidine dipeptide, the isoleucine tripeptide, and cyclic adenosine monophosphate. All of these systems show a significant speed-up with the number of processors up to about eight processors.
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21 July 2010
Research Article|
July 20 2010
Quasi-Newton parallel geometry optimization methods
Steven K. Burger;
Steven K. Burger
a)
Department of Chemistry,
McMaster University
, 1280 Main St. West, Hamilton, Ontario L8S 4M1, Canada
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Paul W. Ayers
Paul W. Ayers
b)
Department of Chemistry,
McMaster University
, 1280 Main St. West, Hamilton, Ontario L8S 4M1, Canada
Search for other works by this author on:
a)
Author to whom correspondence should be addressed. Electronic mail: [email protected].
b)
Electronic mail: [email protected].
J. Chem. Phys. 133, 034116 (2010)
Article history
Received:
January 04 2010
Accepted:
May 28 2010
Citation
Steven K. Burger, Paul W. Ayers; Quasi-Newton parallel geometry optimization methods. J. Chem. Phys. 21 July 2010; 133 (3): 034116. https://doi.org/10.1063/1.3455719
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