We study the translocation of a polymer through a nanopore by means of dissipative particle dynamics (DPD). Unlike Langevin approaches, DPD explicitly takes into account the interactions of solvent and polymer. We find that the translocation time for unforced translocation follows a scaling with in good agreement with the prediction that has been derived by considering hydrodynamics and memory effects within the chain. For bad-solvent conditions , i.e., a diffusive scaling arises as a consequence of the reduced polymer relaxation time. Biased translocation between a good and a bad-solvent reservoir (tuned via the repulsion between solvent and polymer) yields a preferential translocation toward the good solvent with . This observation is consistent with the recent theoretical prediction for driven translocation. When varying the solvent quality by imposing attractive monomer-monomer interactions (such as in Langevin approaches), an artificial translocation toward the bad-solvent side emerges. Using attractive monomer-monomer interactions to mimic a bad solvent hence does not capture the essential physics of the translocation process.
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28 April 2010
Research Article|
April 29 2010
Polymer translocation through a nanopore: The effect of solvent conditions
Felix Kapahnke;
Felix Kapahnke
a)
1Cellular Biophysics Group, German Cancer Research Center, c/o
BIOQUANT
, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany
2Institut für Theoretische Physik,
Universität Heidelberg
, Philosophenweg 19, D-69120 Heidelberg, Germany
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Ulrich Schmidt;
Ulrich Schmidt
a)
1Cellular Biophysics Group, German Cancer Research Center, c/o
BIOQUANT
, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany
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Dieter W. Heermann;
Dieter W. Heermann
2Institut für Theoretische Physik,
Universität Heidelberg
, Philosophenweg 19, D-69120 Heidelberg, Germany
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Matthias Weiss
Matthias Weiss
b)
1Cellular Biophysics Group, German Cancer Research Center, c/o
BIOQUANT
, Im Neuenheimer Feld 267, D-69120 Heidelberg, Germany
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a)
These authors contributed equally to this work.
b)
Electronic mail: m.weiss@dkfz.de.
J. Chem. Phys. 132, 164904 (2010)
Article history
Received:
October 20 2009
Accepted:
March 29 2010
Citation
Felix Kapahnke, Ulrich Schmidt, Dieter W. Heermann, Matthias Weiss; Polymer translocation through a nanopore: The effect of solvent conditions. J. Chem. Phys. 28 April 2010; 132 (16): 164904. https://doi.org/10.1063/1.3400650
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