Existing optimal estimators of nonequilibrium path-ensemble averages are shown to fall within the framework of extended bridge sampling. Using this framework, we derive a general minimal-variance estimator that can combine nonequilibrium trajectory data sampled from multiple path-ensembles to estimate arbitrary functions of nonequilibrium expectations. The framework is also applied to obtain asymptotic variance estimates, which are a useful measure of statistical uncertainty. In particular, we develop asymptotic variance estimates pertaining to Jarzynski’s equality for free energies and the Hummer–Szabo expressions for the potential of mean force, calculated from uni- or bidirectional path samples. These estimators are demonstrated on a model single-molecule pulling experiment. In these simulations, the asymptotic variance expression is found to accurately characterize the confidence intervals around estimators when the bias is small. Hence, the confidence intervals are inaccurately described for unidirectional estimates with large bias, but for this model it largely reflects the true error in a bidirectional estimator derived by Minh and Adib.
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7 October 2009
Research Article|
October 06 2009
Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages Available to Purchase
David D. L. Minh;
David D. L. Minh
a)
1Laboratory of Chemical Physics, NIDDK,
National Institutes of Health
, Bethesda, Maryland 20892, USA
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John D. Chodera
John D. Chodera
b)
2California Institute for Quantitative Biosciences (QB3),
University of California
, Berkeley, Berkeley, California 94720, USA
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David D. L. Minh
1,a)
John D. Chodera
2,b)
1Laboratory of Chemical Physics, NIDDK,
National Institutes of Health
, Bethesda, Maryland 20892, USA
2California Institute for Quantitative Biosciences (QB3),
University of California
, Berkeley, Berkeley, California 94720, USA
a)
Electronic mail: [email protected]. Present address: Biosciences Division, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL 60439 USA.
b)
Electronic mail: [email protected].
J. Chem. Phys. 131, 134110 (2009)
Article history
Received:
July 27 2009
Accepted:
September 13 2009
Citation
David D. L. Minh, John D. Chodera; Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages. J. Chem. Phys. 7 October 2009; 131 (13): 134110. https://doi.org/10.1063/1.3242285
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