We uncovered the underlying energy landscape of the mitogen-activated protein kinases signal transduction cellular network by exploring the statistical natures of the Brownian dynamical trajectories. We introduce a dimensionless quantity: The robustness ratio of energy gap versus local roughness to measure the global topography of the underlying landscape. A high robustness ratio implies funneled landscape. The landscape is quite robust against environmental fluctuations and variants of the intrinsic chemical reaction rates. As the environmental fluctuations or the variances of the inherent chemical reaction rates increase further more, the landscape becomes less robust and more flatter. We also show that more robust network has less dissipation costs. Our approach is quite general and can be applied to other cellular networks.
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7 October 2008
Research Article|
October 03 2008
Robustness and dissipation of mitogen-activated protein kinases signal transduction network: Underlying funneled landscape against stochastic fluctuations Available to Purchase
Jin Wang;
Jin Wang
a)
1State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry,
Chinese Academy of Sciences
, Changchun, Jilin 130022, People’s Republic of China
2Department of Chemistry and Department of Physics,
State University of New York at Stony Brook
, Stony Brook, New York 11794, USA
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Kun Zhang;
Kun Zhang
1State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry,
Chinese Academy of Sciences
, Changchun, Jilin 130022, People’s Republic of China
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Erkwang Wang
Erkwang Wang
a)
1State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry,
Chinese Academy of Sciences
, Changchun, Jilin 130022, People’s Republic of China
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Jin Wang
1,2,a)
Kun Zhang
1
Erkwang Wang
1,a)
1State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry,
Chinese Academy of Sciences
, Changchun, Jilin 130022, People’s Republic of China
2Department of Chemistry and Department of Physics,
State University of New York at Stony Brook
, Stony Brook, New York 11794, USA
a)
Authors to whom correspondence should be addressed. Electronic addresses: [email protected] and [email protected].
J. Chem. Phys. 129, 135101 (2008)
Article history
Received:
April 01 2008
Accepted:
August 26 2008
Citation
Jin Wang, Kun Zhang, Erkwang Wang; Robustness and dissipation of mitogen-activated protein kinases signal transduction network: Underlying funneled landscape against stochastic fluctuations. J. Chem. Phys. 7 October 2008; 129 (13): 135101. https://doi.org/10.1063/1.2985621
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