A new method for performing molecular dynamics simulations under constant pressure is presented. In the method, which is based on the extended system formalism introduced by Andersen, the deterministic equations of motion for the piston degree of freedom are replaced by a Langevin equation; a suitable choice of collision frequency then eliminates the unphysical ‘‘ringing’’ of the volume associated with the piston mass. In this way it is similar to the ‘‘weak coupling algorithm’’ developed by Berendsen and co‐workers to perform molecular dynamics simulation without piston mass effects. It is shown, however, that the weak coupling algorithm induces artifacts into the simulation which can be quite severe for inhomogeneous systems such as aqueous biopolymers or liquid/liquid interfaces.
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15 September 1995
Research Article|
September 15 1995
Constant pressure molecular dynamics simulation: The Langevin piston method
Scott E. Feller;
Scott E. Feller
Biophysics Laboratory, Center for Biologics Evaluation & Research, Food and Drug Administration, Rockville, Maryland 20852‐1448
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Yuhong Zhang;
Yuhong Zhang
Biophysics Laboratory, Center for Biologics Evaluation & Research, Food and Drug Administration, Rockville, Maryland 20852‐1448
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Richard W. Pastor;
Richard W. Pastor
Biophysics Laboratory, Center for Biologics Evaluation & Research, Food and Drug Administration, Rockville, Maryland 20852‐1448
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Bernard R. Brooks
Bernard R. Brooks
Laboratory of Structural Biology, Division of Computer Research & Technology, National Institutes of Health, Bethesda, Maryland 20892
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J. Chem. Phys. 103, 4613–4621 (1995)
Article history
Received:
December 02 1994
Accepted:
June 12 1995
Citation
Scott E. Feller, Yuhong Zhang, Richard W. Pastor, Bernard R. Brooks; Constant pressure molecular dynamics simulation: The Langevin piston method. J. Chem. Phys. 15 September 1995; 103 (11): 4613–4621. https://doi.org/10.1063/1.470648
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