We illustrate relationships between classical kernel-based dimensionality reduction techniques and eigendecompositions of empirical estimates of reproducing kernel Hilbert space operators associated with dynamical systems. In particular, we show that kernel canonical correlation analysis (CCA) can be interpreted in terms of kernel transfer operators and that it can be obtained by optimizing the variational approach for Markov processes score. As a result, we show that coherent sets of particle trajectories can be computed by kernel CCA. We demonstrate the efficiency of this approach with several examples, namely, the well-known Bickley jet, ocean drifter data, and a molecular dynamics problem with a time-dependent potential. Finally, we propose a straightforward generalization of dynamic mode decomposition called coherent mode decomposition. Our results provide a generic machine learning approach to the computation of coherent sets with an objective score that can be used for cross-validation and the comparison of different methods.
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December 2019
Research Article|
December 11 2019
Kernel methods for detecting coherent structures in dynamical data
Stefan Klus;
Stefan Klus
a)
1
Department of Mathematics and Computer Science, Freie Universität Berlin
, 14195 Berlin, Germany
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Brooke E. Husic
;
Brooke E. Husic
b)
1
Department of Mathematics and Computer Science, Freie Universität Berlin
, 14195 Berlin, Germany
2
Department of Chemistry, Stanford University
, Stanford, California 94305, USA
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Mattes Mollenhauer;
Mattes Mollenhauer
c)
1
Department of Mathematics and Computer Science, Freie Universität Berlin
, 14195 Berlin, Germany
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Chaos 29, 123112 (2019)
Article history
Received:
April 18 2019
Accepted:
November 08 2019
Citation
Stefan Klus, Brooke E. Husic, Mattes Mollenhauer, Frank Noé; Kernel methods for detecting coherent structures in dynamical data. Chaos 1 December 2019; 29 (12): 123112. https://doi.org/10.1063/1.5100267
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