Schmidtea mediterranea has a high regeneration ability. Previous studies have discovered genes contributing to this species’ regeneration ability, including genes with orthologs in human. However, no previous comparative studies have investigated these orthologs across a diversity of species. Understanding how the regeneration-related genes evolved in a diverse range of extant species is helpful to both the biological and medical field. Here I reported conservation measurements, pairwise dN/dS, of regeneration-related genes generated from 12 species against human. I then compared them to the pairwise dN/dS of housekeeping under the same criteria and found that the evolution process of genes related to regeneration varies across species and was less conserved than the housekeeping genes, indicating a less evolutionary constraint over regeneration-related genes.

1.
Bateman
,
A.
,
Martin
,
M. J.
,
O’Donovan
,
C.
,
Magrane
,
M.
,
Alpi
,
E.
,
Antunes
,
R.
, …
Zhang
,
J.
(
2017
).
UniProt: the universal protein knowledgebase
.
Nucleic Acids Research
,
45
(
D1
),
D158
D169
..
2.
Brandl
,
H.
,
Moon
,
H.
,
Vila-Farré
,
M.
,
Liu
,
S.-Y.
,
Henry
,
I.
, &
Rink
,
J. C.
(
2016
).
PlanMine – a mineable resource of planarian biology and biodiversity
.
Nucleic Acids Research
,
44
(
D1
),
D764
D773
..
3.
Eisenberg
,
E.
, &
Levanon
,
E. Y.
(
2014
).
Corrigendum to: Human housekeeping genes, revisited
.
Trends in Genetics
,
30
(
3
),
119
120
..
4.
Goldman
,
N.
, &
Yang
,
Z.
(
1994
).
A codon-based model of nucleotide substitution for protein-coding DNA sequences
.
Molecular Biology and Evolution
,
11
(
5
),
725
736
..
5.
Kimura
,
M.
(
1977
).
Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
.
Nature
,
267
(
5608
),
275
276
..
6.
Kryazhimskiy
,
S.
, &
Plotkin
,
J. B.
(
2008
).
The Population Genetics of dN/dS
.
PLoS Genetics
,
4
(
12
),
e1000304
..
7.
Muse
,
S. V
, &
Gaut
,
B. S.
(
1994
).
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
.
Molecular Biology and Evolution
,
11
(
5
),
715
724
..
8.
Önal
,
P.
,
Grün
,
D.
,
Adamidi
,
C.
,
Rybak
,
A.
,
Solana
,
J.
,
Mastrobuoni
,
G.
,
Rajewsky
,
N.
(
2012
).
Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells
.
The EMBO Journal
,
31
(
12
),
2755
2769
..
9.
Oviedo
,
N. J.
, &
Levin
,
M.
(
2007
).
smedinx-11 is a planarian stem cell gap junction gene required for regeneration and homeostasis
.
Development
,
134
(
17
),
3121
3131
..
10.
Palmisano
,
I.
, &
Di Giovanni
,
S.
(
2018
).
Advances and Limitations of Current Epigenetic Studies Investigating Mammalian Axonal Regeneration
.
Neurotherapeutics
,
15
(
3
),
529
540
..
11.
Reddien
,
P. W.
,
Bermange
,
A. L.
,
Murfitt
,
K. J.
,
Jennings
,
J. R.
, &
Sánchez
Alvarado
, A. (
2005a
).
Identification of Genes Needed for Regeneration, Stem Cell Function, and Tissue Homeostasis by Systematic Gene Perturbation in Planaria
.
Developmental Cell
,
8
(
5
),
635
649
..
12.
Reddien
,
P. W.
,
Bermange
,
A. L.
,
Murfitt
,
K. J.
,
Jennings
,
J. R.
, &
Sánchez
Alvarado
, A. (
2005b
).
Identification of Genes Needed for Regeneration, Stem Cell Function, and Tissue Homeostasis by Systematic Gene Perturbation in Planaria
.
Developmental Cell
,
8
(
5
),
635
649
..
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