Bacillus lehensis is a Gram-positive and endospore-forming alkalitolerant bacterial strain. In recent years there has been increasing interest in alkaliphilic bacteria and their ability to grow under extreme conditions as well as their ability to serve various important functions in industrial biology especially enzyme production. Small open reading frames (sORFs) have emerged as important regulators in various biological roles such as tumor progression, hormone signalling and stress response. Over the past decade, many biocomputational tools have been developed to predict genes in bacterial genomes. In this study, three softwares were used to predict sORF (≤ 80 aa) in B. lehensis by using whole genome sequence. We used comparative analysis to identify the sORFs in B. lehensis that conserved across all other bacterial genomes. We extended the analysis by doing the homology analysis against protein database. This study established the sORFs in B. lehensis that are conserved across bacteria which might has important biological function which still remain elusive in biological field.
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25 September 2015
THE 2015 UKM FST POSTGRADUATE COLLOQUIUM: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2015 Postgraduate Colloquium
15–16 April 2015
Selangor, Malaysia
Research Article|
September 25 2015
Computational discovery of small open reading frames in Bacillus lehensis Available to Purchase
Nurhafizhoh Zainuddin;
Nurhafizhoh Zainuddin
a)
1School of Biosciences and Biotechnology, Faculty of Science and Technology,
Universiti Kebangsaan Malaysia
, 43600 UKM-Bangi, Selangor, Malaysia
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Rosli Md. Illias;
Rosli Md. Illias
b)
2Bioprocess Engineering Department, Faculty of Chemical Engineering,
Universiti Teknologi Malaysia
, 81310,UTM Skudai, Johor, Malaysia
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Nor Muhammad Mahadi;
Nor Muhammad Mahadi
c)
3
Malaysia Genome Institute
, Ministry of Science, Technology & Innovation, Jalan Bangi, 43000 Kajang, Selangor, Malaysia
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Mohd Firdaus-Raih
Mohd Firdaus-Raih
d)
1School of Biosciences and Biotechnology, Faculty of Science and Technology,
Universiti Kebangsaan Malaysia
, 43600 UKM-Bangi, Selangor, Malaysia
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Nurhafizhoh Zainuddin
1,a)
Rosli Md. Illias
2,b)
Nor Muhammad Mahadi
3,c)
Mohd Firdaus-Raih
1,d)
1School of Biosciences and Biotechnology, Faculty of Science and Technology,
Universiti Kebangsaan Malaysia
, 43600 UKM-Bangi, Selangor, Malaysia
2Bioprocess Engineering Department, Faculty of Chemical Engineering,
Universiti Teknologi Malaysia
, 81310,UTM Skudai, Johor, Malaysia
3
Malaysia Genome Institute
, Ministry of Science, Technology & Innovation, Jalan Bangi, 43000 Kajang, Selangor, Malaysia
d)
Corresponding author: [email protected]
AIP Conf. Proc. 1678, 030029 (2015)
Citation
Nurhafizhoh Zainuddin, Rosli Md. Illias, Nor Muhammad Mahadi, Mohd Firdaus-Raih; Computational discovery of small open reading frames in Bacillus lehensis. AIP Conf. Proc. 25 September 2015; 1678 (1): 030029. https://doi.org/10.1063/1.4931250
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