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Journal Articles

Computational modeling of the physical features that influence breast cancer invasion into adipose tissue

Yitong Zheng, Dong Wang, Garrett Beeghly, Claudia Fischbach, Mark D. Shattuck, Corey S. O'Hern
Journal: APL Bioengineering
APL Bioeng. 8, 036104 (2024)
https://doi.org/10.1063/5.0209019
Published: July 2024
View article titled, Computational modeling of the physical features that influence breast cancer invasion into adipose tissue
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Journal Articles

A multi-scale numerical approach to study monoclonal antibodies in solution

Marco Polimeni, Emanuela Zaccarelli, Alessandro Gulotta, Mikael Lund, Anna Stradner, Peter Schurtenberger
Journal: APL Bioengineering
APL Bioeng. 8, 016111 (2024)
https://doi.org/10.1063/5.0186642
Published: February 2024
View article titled, A multi-scale numerical approach to study monoclonal antibodies in solution
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Includes: Supplementary data
Journal Articles

Altered blood flow due to larger aortic diameters in patients with transcatheter heart valve thrombosis

Editor’s Pick
Silje Ekroll Jahren, Caglayan Demirel, Karoline-Marie Bornemann, Pascal Corso, Stefan Stortecky, Dominik Obrist
Journal: APL Bioengineering
APL Bioeng. 7, 046120 (2023)
https://doi.org/10.1063/5.0170583
Published: December 2023
View article titled, Altered blood flow due to larger aortic diameters in patients with transcatheter heart valve thrombosis
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Journal Articles

Structure–function relationships for squid skin-inspired wearable thermoregulatory materials

Scilight
Panyiming Liu, Erica M. Leung, Mohsin Ali Badshah, Christopher S. Moore, Alon A. Gorodetsky
Journal: APL Bioengineering
APL Bioeng. 7, 046111 (2023)
https://doi.org/10.1063/5.0149289
Published: November 2023
View article titled, Structure–function relationships for squid skin-inspired wearable thermoregulatory materials
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Includes: Supplementary data
Journal Articles

Human gut epithelium features recapitulated in MINERVA 2.0 millifluidic organ-on-a-chip device

Francesca Donnaloja, Luca Izzo, Marzia Campanile, Simone Perottoni, Lucia Boeri, Francesca Fanizza, Lorenzo Sardelli, Emanuela Jacchetti, Manuela T. Raimondi, Laura Di Rito, Ilaria Craparotta, Marco Bolis, Carmen Giordano, Diego Albani
Journal: APL Bioengineering
APL Bioeng. 7, 036117 (2023)
https://doi.org/10.1063/5.0144862
Published: September 2023
View article titled, Human gut epithelium features recapitulated in MINERVA 2.0 millifluidic organ-on-a-chip device
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Includes: Supplementary data
Journal Articles

Hemodynamics of thrombus formation in intracranial aneurysms: An in silico observational study

Scilight
Qiongyao Liu, Ali Sarrami-Foroushani, Yongxing Wang, Michael MacRaild, Christopher Kelly, Fengming Lin, Yan Xia, Shuang Song, Nishant Ravikumar, Tufail Patankar, Zeike A. Taylor, Toni Lassila, Alejandro F. Frangi
Journal: APL Bioengineering
APL Bioeng. 7, 036102 (2023)
https://doi.org/10.1063/5.0144848
Published: July 2023
View article titled, Hemodynamics of thrombus formation in intracranial aneurysms: An <em>in silico</em> observational study
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Includes: Supplementary data
Journal Articles

Retraction: “Computational pulmonary edema: A microvascular model of alveolar capillary and interstitial flow” [APL Bioeng. 6 , 046104 (2022)]

James B. Grotberg, Francesco Romanò
Journal: APL Bioengineering
APL Bioeng. 7, 029902 (2023)
https://doi.org/10.1063/5.0158314
Published: June 2023
View article titled, Retraction: “Computational pulmonary edema: A microvascular model of alveolar capillary and interstitial flow” [APL Bioeng. 6 , 046104 (2022)]
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Journal Articles

The accumulation of particles in ureteric stents is mediated by flow dynamics: Full-scale computational and experimental modeling of the occluded and unoccluded ureter

Ali Mosayyebi, Aravinthan Vijayakumar, Maryam Mosayebi, Dirk Lange, Bhaskar K. Somani, Costantino Manes, Dario Carugo
Journal: APL Bioengineering
APL Bioeng. 6, 026102 (2022)
https://doi.org/10.1063/5.0083260
Published: May 2022
View article titled, The accumulation of particles in ureteric stents is mediated by flow dynamics: Full-scale computational and experimental modeling of the occluded and unoccluded ureter
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Includes: Supplementary data
Journal Articles

An optimal control approach for enhancing natural killer cells' secretion of cytolytic molecules

Sahak Z. Makaryan, Stacey D. Finley
Journal: APL Bioengineering
APL Bioeng. 4, 046107 (2020)
https://doi.org/10.1063/5.0024726
Published: December 2020
View article titled, An optimal control approach for enhancing natural killer cells' secretion of cytolytic molecules
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Includes: Supplementary data
Journal Articles

Cardiovascular patient-specific modeling: Where are we now and what does the future look like?

Editor’s Pick
Alberto Redaelli, Emiliano Votta
Journal: APL Bioengineering
APL Bioeng. 4, 040401 (2020)
https://doi.org/10.1063/5.0031452
Published: November 2020
View article titled, Cardiovascular patient-specific modeling: Where are we now and what does the future look like?
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Journal Articles

Quantification and classification of potassium and calcium disorders with the electrocardiogram: What do clinical studies, modeling, and reconstruction tell us?

N. Pilia, S. Severi, J. G. Raimann, S. Genovesi, O. Dössel, P. Kotanko, C. Corsi, A. Loewe
Journal: APL Bioengineering
APL Bioeng. 4, 041501 (2020)
https://doi.org/10.1063/5.0018504
Published: October 2020
View article titled, Quantification and classification of potassium and calcium disorders with the electrocardiogram: What do clinical studies, modeling, and reconstruction tell us?
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Journal Articles

Data-driven statistical modeling of the emergent behavior of biohybrid microrobots

Eric J. Leaman, Ali Sahari, Mahama A. Traore, Brian Q. Geuther, Carmen M. Morrow, Bahareh Behkam
Journal: APL Bioengineering
APL Bioeng. 4, 016104 (2020)
https://doi.org/10.1063/1.5134926
Published: February 2020
View article titled, Data-driven statistical modeling of the emergent behavior of biohybrid microrobots
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Includes: Supplementary data
Journal Articles

Microphysiological systems

James J. Hickman, Dongeun Huh, Roger D. Kamm
Journal: APL Bioengineering
APL Bioeng. 3, 040401 (2019)
https://doi.org/10.1063/1.5130170
Published: October 2019
View article titled, Microphysiological systems
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Journal Articles

Oxygen consumption in human, tissue-engineered myobundles during basal and electrical stimulation conditions

Brittany N. Davis, Ringo Yen, Varun Prasad, George A. Truskey
Journal: APL Bioengineering
APL Bioeng. 3, 026103 (2019)
https://doi.org/10.1063/1.5093417
Published: May 2019
View article titled, Oxygen consumption in human, tissue-engineered myobundles during basal and electrical stimulation conditions
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Includes: Supplementary data
Journal Articles

A rapid method for determining protein diffusion through hydrogels for regenerative medicine applications

Marian H. Hettiaratchi, Alex Schudel, Tel Rouse, Andrés J. García, Susan N. Thomas, Robert E. Guldberg, Todd C. McDevitt
Journal: APL Bioengineering
APL Bioeng. 2, 026110 (2018)
https://doi.org/10.1063/1.4999925
Published: June 2018
View article titled, A rapid method for determining protein diffusion through hydrogels for regenerative medicine applications
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Includes: Supplementary data
Journal Articles

Critical roles of time-scales in soft tissue growth and remodeling

Marcos Latorre, Jay D. Humphrey
Journal: APL Bioengineering
APL Bioeng. 2, 026108 (2018)
https://doi.org/10.1063/1.5017842
Published: June 2018
View article titled, Critical roles of time-scales in soft tissue growth and remodeling
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Journal Articles

Computational study of aortic hemodynamics for patients with an abnormal aortic valve: The importance of secondary flow at the ascending aorta inlet

S. Pirola, O. A. Jarral, D. P. O'Regan, G. Asimakopoulos, J. R. Anderson, J. R. Pepper, T. Athanasiou, X. Y. Xu
Journal: APL Bioengineering
APL Bioeng. 2, 026101 (2018)
https://doi.org/10.1063/1.5011960
Published: March 2018
View article titled, Computational study of aortic hemodynamics for patients with an abnormal aortic valve: The importance of secondary flow at the ascending aorta inlet
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Journal Articles

Nonlinear statistical iterative reconstruction for propagation-based phase-contrast tomography

Lorenz Hehn, Kaye Morgan, Pidassa Bidola, Wolfgang Noichl, Regine Gradl, Martin Dierolf, Peter B. Noël, Franz Pfeiffer
Journal: APL Bioengineering
APL Bioeng. 2, 016105 (2018)
https://doi.org/10.1063/1.4990387
Published: January 2018
View article titled, Nonlinear statistical iterative reconstruction for propagation-based phase-contrast tomography
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Includes: Supplementary data