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Journal Articles

ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models

Viet Thanh Duy Nguyen, Nhan D. Nguyen, Truong Son Hy
Journal: Structural Dynamics
Struct. Dyn. 11, 064102 (2024)
https://doi.org/10.1063/4.0000271
Published: November 2024
View article titled, ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models
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Journal Articles

Protein dynamics: The future is bright and complicated!

Kwangho Nam, Magnus Wolf-Watz
Journal: Structural Dynamics
Struct. Dyn. 10, 014301 (2023)
https://doi.org/10.1063/4.0000179
Published: February 2023
View article titled, Protein dynamics: The future is bright and complicated!
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Journal Articles

Anti-Stokes fluorescence excitation reveals conformational mobility of the C-phycocyanin chromophores

Georgy V. Tsoraev, Elena A. Protasova, Elizaveta A. Klimanova, Yury L. Ryzhykau, Alexander I. Kuklin, Yury S. Semenov, Baosheng Ge, Wenjun Li, Song Qin, Thomas Friedrich, Nikolai N. Sluchanko, Eugene G. Maksimov
Journal: Structural Dynamics
Struct. Dyn. 9, 054701 (2022)
https://doi.org/10.1063/4.0000164
Published: September 2022
View article titled, Anti-Stokes fluorescence excitation reveals conformational mobility of the C-phycocyanin chromophores
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Includes: Supplementary data
Journal Articles

Developing a macromolecular crystallography driven CURE

Krystle J. McLaughlin
Journal: Structural Dynamics
Struct. Dyn. 8, 020406 (2021)
https://doi.org/10.1063/4.0000089
Published: March 2021
View article titled, Developing a macromolecular crystallography driven CURE
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Journal Articles

Effect of gold nanoparticle incorporation into oil-swollen surfactant lamellar membranes

Michihiro Nagao, Robert Bradbury, Siyam M. Ansar, Christopher L. Kitchens
Journal: Structural Dynamics
Struct. Dyn. 7, 065102 (2020)
https://doi.org/10.1063/4.0000041
Published: December 2020
View article titled, Effect of gold nanoparticle incorporation into oil-swollen surfactant lamellar membranes
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Journal Articles

Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT

Anna S. Gardberg, Annissa J. Huhn, Richard Cummings, Archana Bommi-Reddy, Florence Poy, Jeremy Setser, Valerie Vivat, Francois Brucelle, Jonathan Wilson
Journal: Structural Dynamics
Struct. Dyn. 6, 054702 (2019)
https://doi.org/10.1063/1.5119336
Published: October 2019
View article titled, Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT
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Journal Articles

New insights and innovation from a million crystal structures in the Cambridge Structural Database

Jason C. Cole, Seth Wiggin, Francesca Stanzione
Journal: Structural Dynamics
Struct. Dyn. 6, 054301 (2019)
https://doi.org/10.1063/1.5116878
Published: August 2019
View article titled, New insights and innovation from a million crystal structures in the Cambridge Structural Database
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Includes: Supplementary data
Journal Articles

Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability

Sojin Moon, Junhyung Kim, Jasung Koo, Euiyoung Bae
Journal: Structural Dynamics
Struct. Dyn. 6, 024702 (2019)
https://doi.org/10.1063/1.5089707
Published: March 2019
View article titled, Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability
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Includes: Supplementary data
Journal Articles

Structural enzymology using X-ray free electron lasers

Christopher Kupitz, Jose L. Olmos, Jr., Mark Holl, Lee Tremblay, Kanupriya Pande, Suraj Pandey, Dominik Oberthür, Mark Hunter, Mengning Liang, Andrew Aquila, Jason Tenboer, George Calvey, Andrea Katz, Yujie Chen, Max O. Wiedorn, Juraj Knoska, Alke Meents, Valerio Majriani, Tyler Norwood, Ishwor Poudyal, Thomas Grant, Mitchell D. Miller, Weijun Xu, Aleksandra Tolstikova, Andrew Morgan, Markus Metz, Jose M. Martin-Garcia, James D. Zook, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, Domingo Meza, Raimund Fromme, Shibom Basu, Matthias Frank, Thomas White, Anton Barty, Sasa Bajt, Oleksandr Yefanov, Henry N. Chapman, Nadia Zatsepin, Garrett Nelson, Uwe Weierstall, John Spence, Peter Schwander, Lois Pollack, Petra Fromme, Abbas Ourmazd, George N. Phillips, Jr., Marius Schmidt
Journal: Structural Dynamics
Struct. Dyn. 4, 044003 (2017)
https://doi.org/10.1063/1.4972069
Published: December 2016
View article titled, Structural enzymology using X-ray free electron lasers
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Includes: Supplementary data
Journal Articles

Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate

Hongnan Cao, Kemin Tan, Fengbin Wang, Lance Bigelow, Ragothaman M. Yennamalli, Robert Jedrzejczak, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips, Jr.
Journal: Structural Dynamics
Struct. Dyn. 3, 034702 (2016)
https://doi.org/10.1063/1.4948539
Published: April 2016
View article titled, Structural dynamics of a methionine <em>γ</em>-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate
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Includes: Supplementary data
Journal Articles

Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis

Editor’s Pick
Lu Han, Shanteri Singh, Jon S. Thorson, George N. Phillips, Jr.
Journal: Structural Dynamics
Struct. Dyn. 3, 012004 (2016)
https://doi.org/10.1063/1.4941368
Published: February 2016
View article titled, Loop dynamics of thymidine diphosphate-rhamnose 3′-<em>O</em>-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis
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